AmiGO 2 Manual: Linking

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Warning: This is a proposal and should not be treated like documentation.

AmiGO 2 now offers a stable set of URLs for linking. This page contains the supported methods for linking into AmiGO 2.

Users may also be interested in some of the more RESTy aspects of AmiGO 2 or the possibility of incorporating the widgets and interfaces used in AmiGO 2 into their own applications.

Terms

The supported format for linking to a GO term is:

http://amigo.geneontology.org/term/GO:XXXXXXX

For example:

http://amigo.geneontology.org/term/GO:0022008

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a term details page by using the parameters described in the Searches section below.

Gene Products

The supported format for linking to a GO gene product is:

http://amigo.geneontology.org/gene_product/AAA:ZZZZZZZ

For example:

http://amigo.geneontology.org/gene_product/MGI:MGI:2177178

This will resolve to an HTML page. Users may also manipulate the default search of the embedded search pane on a gene product details page by using the parameters described in the Searches section below.

Searches

Base search pages

There are three base search pages:

In order, they let you search for ontology terms

Defining incoming searches

Query (q)

Removable filters (fq)

Sticky filters/pins (sfq)

Other pages

While one can link to other pages in AmiGO 2, they are not formally considered resources and have no publicly defined variations or variables that can be passed through the URL.

These URLs may change at short notice.