AmiGO 2 Manual: Search

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This page gives some examples of advanced queries in AmiGO 2

Annotations

For ontology queries, start at http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search

Epithelia-related processes outside bilateria

Motivation: epithelial cells are often regarded to be eumetazoan innovations. Here we use AmiGO 2 to explore this hypothesis and check for potential errorsin GO.

  1. Start at http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search - the starting point is all annotations
  2. Type: epithel in the filter box to the left of the results. The results are very inclusive - anything that matches this string in any field, or descendent of term that matches this string. Approx ~10k annotations
  3. Open "taxon" facet
  4. Select "-" next to bilateria

Explore the results using the left and right arrows. At the time of writing there are some obvious erroroneus annotations - can you spot them? You can filter out the IEA using the "evidence" filter.


Ontology

For ontology queries, go to http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search And select "Ontology"

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Catgeory:AmiGO Catgeory:AmiGO 2