AmiGO 2 Manual: Search: Difference between revisions
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Revision as of 22:14, 30 March 2013
This page gives some examples of advanced queries in AmiGO 2
Annotations
For ontology queries, start at http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search
Motivation: epithelial cells are often regarded to be eumetazoan innovations. Here we use AmiGO 2 to explore this hypothesis and check for potential errorsin GO.
- Start at http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search - the starting point is all annotations
- Type: epithel in the filter box to the left of the results. The results are very inclusive - anything that matches this string in any field, or descendent of term that matches this string. Approx ~10k annotations
- Open "taxon" facet
- Select "-" next to bilateria
Explore the results using the left and right arrows. At the time of writing there are some obvious erroroneus annotations - can you spot them? You can filter out the IEA using the "evidence" filter.
Ontology
For ontology queries, go to http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo/search And select "Ontology"