AmiGO Hub: Group Meetings: Difference between revisions

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=next meeting=
=Next Hub Meeting: July 15th, 2008=
*Date: June 26, 2007
*Chair:


See [[AWG_meeting_chairs|meeting chair rota]] for next chair
[[AHWG-20080715|Agenda and Action Items]]


=Previous Meetings=
=Previous Meetings=
==June 12, 2007==
Chair: Seth, Absent: Eurie
===Agenda===
*Progress towards June release
*Integration of new functionality
*What formats should be added
*Test protocols for WG
*Amelia's prototypes
===Minutes===
*Progress ok, should have something testable this week
*Decided that since the flat file was deprecated, it should be replaced with OBO format
*Discussed how the WG should test for this release
*Discussed what the new front page should look like
*Discussed naming the new functionality
*Varsha from the HGNC to join the AWG
===Action Items===
*Inform other groups of our conference call time
*Replace flat file with OBO file
*Get prototypes to WG
*Solicit names for "termfinder" and "map2slim" from WG
*Front page mockups, ask how WG likes them
*Start automated testing


==May 29, 2007==
===[[AHWG-20080701|July 1, 2008]]===
===Agenda===
Chair: Jane


===Minutes===
===[[AHWG-20080617|June 17, 2008]]===


Aim of the meeting was to look into AmiGO 1.0 release status in regard to the new features voted for by the AWG:
===[[AHWG-20080603|June 3, 2008]]===


===List as voted on by the AWG===
===[[AHWG-20080520|May 20, 2008]]===
'''1.  download options'''
*basic option is in there (tab-delimited)
*long term needs more interface needs work to display extra download options


Discussion about the AWG exercise, to get people talking about features they do and don't like about different commonly used web interfaces. Eurie voiced concerns that the AWG doesn't know why it's performing these exercises, hence they lose interest.
===[[AHWG-20080506|May 06, 2008]]===
'''2.  sorted search results'''
*implemented (has a bug)
'''3.  searching with mis-spelled terms'''
*no progress on this item (what do AWG think?)
'''4.  improved gene product search'''
*implemented
'''5.  a tie between:'''
'''5a. organize and allow filtering species by kingdom'''
*out of time - need data in database
'''5b. advanced Search radio button'''
*implemented (near as)


====Long-standing wish list items====
===[[AHWG-20080415|April 15, 2008]]===
'''1.  Term Finder'''
*Had to redesign to fit into AmiGO 1.0, almost there


Discussion on session data. Will look at further.
===[[AHWG-20080401|April 01, 2008]]===


'''2.  Term Mapper'''
===[[AHWG-20080318|March 18, 2008]]===
*As Term Finder


'''3.  IEA'''
===[[AHWG-20080304|March 04, 2008]]===
*Wait until AmiGO 2.0


===[[AHWG-20080115|January 15, 2008]]===


Ben to send log files to Amelia.
==[[AHWG-2007|2007 Meeting minutes]]==


====Additional functionalities====
1.  New short URL
*already there, and ready. Need to give people more warning
**COMMENT: more warning for what, testing?  not users - they should never care about URL syntax as long as they are backwards compatible.


 
[[Category:AmiGO Hub]]
Timescale: testing during June, July release?
'''Soft deadline for first beta - last week of June.'''
 
==May 1, 2007==
===Agenda===
Chair: Ben
 
*Can we discuss the role of the meeting_chair tomorrow?  Most of us assume that people remember these meetings and call/logon etc without  reminders (Rama)
 
===Minutes===
 
* we will set up an email reminder (Friday morning Pacific US time).  This will go to the HUB group with a reminder to send agenda items.  There will be a link to this wiki page so that we can determine who the chairperson is.  This is better than the chart (AWG meeting chairs) because we often skip a meeting.  Ben will set up the cron job that sends the email.
* meeting chair should add minutes on this page, and update next meeting chair.
* If there are no agenda items, we can assume that there is no meeting
* similar policy will be adopted for full AWG.  You might get stuck with back-to-back chairing due to missed meetings.  Suck it up.
* we would like to set up webx "working group" meetings to review other sites' methods and interfaces for the types of queries we will run.  We should use Jane's flowcharts: [[AmiGO_workflows]]
 
==Feb 20th, 2007==
===Agenda===
None Specified
===Minutes===
* Ben - new servers on schedule, Stuart confirms we will switch over wed. afternoon (PDT)
* Rotating meeting chairs debate: We will just rotate chairs week-by-week.
 
See: [[AWG_meeting_chairs|Revised Rota for chairing AWG meetings]]
 
* Seth is tweaking autocomplete.
* Jane does not like Princeton GO slim mapper - doesn't show division of GPs into slim catgories.
* Seth not sure if Chris' API handles shows the genes mappings or just numbers.
* dividing lines between amigo1/amigo2. - should slim mapper be integrated into 1.0 vs. 2.0.
* Ben - if we release seperately, we should freeze dev. on amigo 1.  Would people care if we stopped developing amigo 1.0?  Similar question with autocomplete - we shouldn't back add this to amigo 1.0.
* How complete is map2slim?  Jane will look at it once Seth repairs it.
* Comments on term finder - separate ontologies, other comments?
* Demo of term finder - should we have filters by individual evidence codes?  Should we keep them there for educational purposes?    How to handle different types of identifiers?  Even synoymns of valid go gene products?    Expected outputs?  Coming soon, connecting term finder and map2slim?
*Wiki page organization screwed up by Category:Amigo working group.  Jane will make a new Amigo working group page (w/out category)

Latest revision as of 08:54, 3 July 2008