Difference between revisions of "AmiGO Manual: Overview"

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[https://sourceforge.net/projects/geneontology SourceForge.net page].
 
[https://sourceforge.net/projects/geneontology SourceForge.net page].
  
For full installation instructions, please see the [[AmiGO_Manual:_Installation]] wiki pages.
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For full installation instructions, please see the [[AmiGO_Manual:_Installation | installation]] wiki pages.
  
 
= Browser Compatibility =
 
= Browser Compatibility =
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The most used components  
 
The most used components  
  
AmiGO's major components are the ones that are listed at the top of ever page; these are the ones where your work will usually begin.
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AmiGO's major components are the ones that are listed at the top of every page; these are the ones where your work will usually begin.
  
 
*[[AmiGO_Manual:_Main_Page | Main Page]]
 
*[[AmiGO_Manual:_Main_Page | Main Page]]
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*[[AmiGO_Manual:_Bar_Chart | Bar Chart]]
 
*[[AmiGO_Manual:_Bar_Chart | Bar Chart]]
 
*[[AmiGO_Manual:_GraphViz | GraphViz]]
 
*[[AmiGO_Manual:_GraphViz | GraphViz]]
 
 
*[[AmiGO_Manual:_RG_Graphical_View | Reference Genome Graphical View]]
 
*[[AmiGO_Manual:_RG_Graphical_View | Reference Genome Graphical View]]
  

Revision as of 15:48, 5 March 2009

Introduction

AmiGO is the official web-based set tools for searching and browsing the Gene Ontology database, which consists of a controlled vocabulary of terms covering biological concepts, and a large number of genes or gene products whose attributes have been annotated using GO terms.

It can be accessed online at the main installation or deployed locally.

To learn more about what the Gene Ontology is and what it does, please read the introductory documentation.

What can I do using AmiGO?

Availability

AmiGO is an open source software project and can be downloaded and installed as part of the go-dev CVS repository from the Gene Ontology SourceForge.net page.

For full installation instructions, please see the installation wiki pages.

Browser Compatibility

AmiGO is compatible with most modern operating system/browser combinations with good CSS support, including:

  • Firefox on Linux, Windows, and Mac OS X.
  • Mozilla/Netscape 6 on Linux, Windows, and Mac OS X.
  • IE on Windows, but NOT on Mac OS X. IE on Mac OS X does support CSS standards.
  • Safari on Mac OS X.
  • Konqueror on Linux.
  • Opera on Linux, Windows, and Mac OS X.

In order to use all of the functionality available in this version of AmiGO, we recommend that cookies are allowed and JavaScript is turned on. The Main Window

The HTML page you view may vary slightly in details.

Components

AmiGO is made up of several interacting programs that work together to create a coherent whole.

Main components

The most used components

AmiGO's major components are the ones that are listed at the top of every page; these are the ones where your work will usually begin.

Pages from the main components

Other Components

AmiGO's other components are those that have specialized output in result of some kind of action.