AmiGO Manual: Term Enrichment: Difference between revisions
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=Gene Product List= | =Gene Product List= | ||
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=Background Set= | =Background Set= | ||
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==Filtering== | |||
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==Thresholds== | ==Thresholds== | ||
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=Advanced Options= | =Advanced Options= | ||
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==Result Types== | ==Result Types== | ||
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==Results Formats== | ==Results Formats== | ||
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[[Category:AmiGO_Manual]] | [[Category:AmiGO_Manual]] | ||
[[Category:AmiGO]] | [[Category:AmiGO]] | ||
Revision as of 18:09, 9 March 2009
The Term Enrichment tool finds significant shared GO Terms or parents of those GO terms, used to describe the genes in the query/input set to help discover what those genes may have in common. The Term Enrichment tool makes use of the GO-TermFinder perl module written by Gavin Sherlock and Shuai Weng at Stanford University.
Non-database filters (e.g. species, evidence code) are not used in the calculation.
The input for the terms must be in the form: GO:xxxxxxx, where x is an integer 0-9, with whitespace between the ids.
The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the Gene Association File format.
Gene Product List
...
Background Set
...
Filtering
...
Thresholds
...
Advanced Options
...
Result Types
...
Results Formats
...