https://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&feed=atom&action=historyAmiGO Manual: Term Search - Revision history2024-03-29T08:33:20ZRevision history for this page on the wikiMediaWiki 1.40.0https://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&diff=18416&oldid=prevSjcarbon at 22:30, 6 March 20092009-03-06T22:30:29Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Term searches can be filtered by ontology to limit the results to the selected ontology or ontologies. The default is to search all ontologies; select more than one ontology to display by control-clicking (apple-click on a Mac) the names and click '''Set filters'''. If no options are selected or you click '''Reset filters''', AmiGO will display results from all ontologies. </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Term searches can be filtered by ontology to limit the results to the selected ontology or ontologies. The default is to search all ontologies; select more than one ontology to display by control-clicking (apple-click on a Mac) the names and click '''Set filters'''. If no options are selected or you click '''Reset filters''', AmiGO will display results from all ontologies. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Category:AmiGO_working_group]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
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</table>Sjcarbonhttps://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&diff=18415&oldid=prevSjcarbon at 22:30, 6 March 20092009-03-06T22:30:03Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>By default, the term search looks at GO term names, synonyms and GO IDs. To search the definition, comments, database cross-references, or other term information, please use the [[AmiGO_Manual:_Search | <del style="font-weight: bold; text-decoration: none;">Advanced </del>Search]] option in the toolbar at the top of <del style="font-weight: bold; text-decoration: none;">the </del>page.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>By default, the term search looks at GO term names, synonyms and GO IDs. To search the definition, comments, database cross-references, or other term information, please use the [[AmiGO_Manual:_Search | Search]] option in the toolbar at the top of <ins style="font-weight: bold; text-decoration: none;">every </ins>page.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td></tr>
</table>Sjcarbonhttps://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&diff=18342&oldid=prevSjcarbon at 05:56, 5 March 20092009-03-05T05:56:19Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>By default, the term search looks at GO term names, synonyms and GO IDs. To search the definition, comments, database cross-references, or other term information, please use the Advanced Search option in the toolbar at the top of the page.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>By default, the term search looks at GO term names, synonyms and GO IDs. To search the definition, comments, database cross-references, or other term information, please use the <ins style="font-weight: bold; text-decoration: none;">[[AmiGO_Manual:_Search | </ins>Advanced Search<ins style="font-weight: bold; text-decoration: none;">]] </ins>option in the toolbar at the top of the page.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Clicking on a term name brings you to the term details page for that GO term. Clicking on the '''[show def]''' link displays the definition of that term right below the term name on the search results page itself. Clicking on the '''[view associations]''' link opens the term associations page, displaying all the genes and gene products annotated to that term. Clicking on the name of the ontology (molecular function or cellular component or biological process) takes you to the documentation at the GO website on the scope and definition of these ontologies.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Clicking on a term name brings you to the <ins style="font-weight: bold; text-decoration: none;">[[AmiGO_Manual:_Term_Details | </ins>term details page<ins style="font-weight: bold; text-decoration: none;">]] </ins>for that GO term. Clicking on the '''[show def]''' link displays the definition of that term right below the term name on the search results page itself. Clicking on the '''[view associations]''' link opens the term associations page, displaying all the genes and gene products annotated to that term. Clicking on the name of the ontology (molecular function or cellular component or biological process) takes you to the documentation at the GO website on the scope and definition of these ontologies.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Terms displayed against a grey background are obsolete; the '''[show def]''' and '''[view associations]''' options are not available for obsolete terms. Some obsolete terms have comments advising annotators which terms would be suitable substitutes for annotation; if so, these are displayed in the term search results.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Terms displayed against a grey background are obsolete; the '''[show def]''' and '''[view associations]''' options are not available for obsolete terms. Some obsolete terms have comments advising annotators which terms would be suitable substitutes for annotation; if so, these are displayed in the term search results.</div></td></tr>
</table>Sjcarbonhttps://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&diff=18341&oldid=prevSjcarbon at 05:54, 5 March 20092009-03-05T05:54:30Z<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Simple Term Search=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Simple Term Search=</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The GO term search is available from the AmiGO home page or by clicking on the Search link in the toolbar at the top of all pages in AmiGO. Enter one or more words or a GO ID into the query box; the query terms do not need to be in order or exactly as they appear in a GO term name. AmiGO will search GO term names, IDs and synonyms, and will return any terms that contain all the words in the query.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The GO term search is available from the AmiGO home page or by clicking on the <ins style="font-weight: bold; text-decoration: none;">'''</ins>Search<ins style="font-weight: bold; text-decoration: none;">''' </ins>link in the toolbar at the top of all pages in AmiGO. Enter one or more words or a GO ID into the query box; the query terms do not need to be in order or exactly as they appear in a GO term name. AmiGO will search GO term names, IDs and synonyms, and will return any terms that contain all the words in the query.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>If you know the GO ID or the name of the term you are looking for, select the exact match checkbox to return only terms which fully match your query.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>If you know the GO ID or the name of the term you are looking for, select the <ins style="font-weight: bold; text-decoration: none;">'''</ins>exact match<ins style="font-weight: bold; text-decoration: none;">''' </ins>checkbox to return only terms which fully match your query.</div></td></tr>
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<td colspan="2" class="diff-lineno">Line 11:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Search results=</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The results table lists the GO terms that match the query, sorted by term name, with the part(s) of the term that match the search term(s) highlighted in green. If the query match is in the term synonym(s), the matching synonym(s) will be displayed below the term name. If there is more than one matching synonym, the first synonym will be shown, followed by the text and x more; clicking on this text will display all the matching synonyms.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The results table lists the GO terms that match the query, sorted by term name, with the part(s) of the term that match the search term(s) highlighted in green. If the query match is in the term synonym(s), the matching synonym(s) will be displayed below the term name. If there is more than one matching synonym, the first synonym will be shown, followed by the text <ins style="font-weight: bold; text-decoration: none;">'''</ins>and x more<ins style="font-weight: bold; text-decoration: none;">'''</ins>; clicking on this text will display all the matching synonyms.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Ts1.png]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Ts1.png]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Clicking on a term name brings you to the term details page for that GO term. Clicking on the [show def] link displays the definition of that term right below the term name on the search results page itself. Clicking on the [view associations] link opens the term associations page, displaying all the genes and gene products annotated to that term. Clicking on the name of the ontology (molecular function or cellular component or biological process) takes you to the documentation at the GO website on the scope and definition of these ontologies.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Clicking on a term name brings you to the term details page for that GO term. Clicking on the <ins style="font-weight: bold; text-decoration: none;">'''</ins>[show def]<ins style="font-weight: bold; text-decoration: none;">''' </ins>link displays the definition of that term right below the term name on the search results page itself. Clicking on the <ins style="font-weight: bold; text-decoration: none;">'''</ins>[view associations]<ins style="font-weight: bold; text-decoration: none;">''' </ins>link opens the term associations page, displaying all the genes and gene products annotated to that term. Clicking on the name of the ontology (molecular function or cellular component or biological process) takes you to the documentation at the GO website on the scope and definition of these ontologies.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Terms displayed against a grey background are obsolete; the [show def] and [view associations] options are not available for obsolete terms. Some obsolete terms have comments advising annotators which terms would be suitable substitutes for annotation; if so, these are displayed in the term search results.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Terms displayed against a grey background are obsolete; the <ins style="font-weight: bold; text-decoration: none;">'''</ins>[show def]<ins style="font-weight: bold; text-decoration: none;">''' </ins>and <ins style="font-weight: bold; text-decoration: none;">'''</ins>[view associations]<ins style="font-weight: bold; text-decoration: none;">''' </ins>options are not available for obsolete terms. Some obsolete terms have comments advising annotators which terms would be suitable substitutes for annotation; if so, these are displayed in the term search results.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Filtering=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Filtering=</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Term searches can be filtered by ontology to limit the results to the selected ontology or ontologies. The default is to search all ontologies; select more than one ontology to display by control-clicking (apple-click on a Mac) the names and click Set filters. If no options are selected or you click Reset filters, AmiGO will display results from all ontologies. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Term searches can be filtered by ontology to limit the results to the selected ontology or ontologies. The default is to search all ontologies; select more than one ontology to display by control-clicking (apple-click on a Mac) the names and click <ins style="font-weight: bold; text-decoration: none;">'''</ins>Set filters<ins style="font-weight: bold; text-decoration: none;">'''</ins>. If no options are selected or you click <ins style="font-weight: bold; text-decoration: none;">'''</ins>Reset filters<ins style="font-weight: bold; text-decoration: none;">'''</ins>, AmiGO will display results from all ontologies. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:AmiGO_working_group]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:AmiGO_working_group]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:AmiGO_Manual]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:AmiGO_Manual]]</div></td></tr>
</table>Sjcarbonhttps://wiki.geneontology.org/index.php?title=AmiGO_Manual:_Term_Search&diff=18340&oldid=prevSjcarbon: New page: =Simple Term Search= The GO term search is available from the AmiGO home page or by clicking on the Search link in the toolbar at the top of all pages in AmiGO. Enter one or more words o...2009-03-05T05:52:03Z<p>New page: =Simple Term Search= The GO term search is available from the AmiGO home page or by clicking on the Search link in the toolbar at the top of all pages in AmiGO. Enter one or more words o...</p>
<p><b>New page</b></p><div><br />
=Simple Term Search=<br />
<br />
The GO term search is available from the AmiGO home page or by clicking on the Search link in the toolbar at the top of all pages in AmiGO. Enter one or more words or a GO ID into the query box; the query terms do not need to be in order or exactly as they appear in a GO term name. AmiGO will search GO term names, IDs and synonyms, and will return any terms that contain all the words in the query.<br />
<br />
If you know the GO ID or the name of the term you are looking for, select the exact match checkbox to return only terms which fully match your query.<br />
<br />
==Searching additional fields==<br />
<br />
By default, the term search looks at GO term names, synonyms and GO IDs. To search the definition, comments, database cross-references, or other term information, please use the Advanced Search option in the toolbar at the top of the page.<br />
<br />
=Search results=<br />
<br />
The results table lists the GO terms that match the query, sorted by term name, with the part(s) of the term that match the search term(s) highlighted in green. If the query match is in the term synonym(s), the matching synonym(s) will be displayed below the term name. If there is more than one matching synonym, the first synonym will be shown, followed by the text and x more; clicking on this text will display all the matching synonyms.<br />
<br />
[[Image:Ts1.png]]<br />
<br />
Clicking on a term name brings you to the term details page for that GO term. Clicking on the [show def] link displays the definition of that term right below the term name on the search results page itself. Clicking on the [view associations] link opens the term associations page, displaying all the genes and gene products annotated to that term. Clicking on the name of the ontology (molecular function or cellular component or biological process) takes you to the documentation at the GO website on the scope and definition of these ontologies.<br />
<br />
Terms displayed against a grey background are obsolete; the [show def] and [view associations] options are not available for obsolete terms. Some obsolete terms have comments advising annotators which terms would be suitable substitutes for annotation; if so, these are displayed in the term search results.<br />
<br />
=Filtering=<br />
<br />
Term searches can be filtered by ontology to limit the results to the selected ontology or ontologies. The default is to search all ontologies; select more than one ontology to display by control-clicking (apple-click on a Mac) the names and click Set filters. If no options are selected or you click Reset filters, AmiGO will display results from all ontologies. <br />
<br />
[[Category:AmiGO_working_group]]<br />
[[Category:AmiGO_Manual]]</div>Sjcarbon