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== [[Introduction to Annotation]] ==
== [[Introduction to Annotation]] ==


== Ontology-Specific Guidelines ==
== Ontology-Specific Annotation Guidelines ==


=== [[Molecular Function]] ===
=== [[Molecular Function]] ===
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=== [[Biological Process]] ===
=== [[Biological Process]] ===
* Annotation Relations for Biological Process
*Term-specific Guidelines for Biological Process


== [[Guide to GO Evidence Codes]] ==
== [[Guide to GO Evidence Codes]] ==
== [[Tips to Produce High Quality Annotations]] ==
== Noctua and GO-CAM Models ==
== Noctua and GO-CAM Models ==
== Annotation Extensions ==
== [[Annotation Extensions]] ==
**[[Annotation Extension Relation Subsets]]
**[[Column 16: Cell Type]]
**[[Column 16: Targets]]
**[[Issues with Annotation Extension relations]]
**[[Annotation Extension Relation Documentation Jamboree]]
**[[Guidance for updating deprecated Annotation Extension Relations]]


==[[Annotation Review Request]] ==
==[[Annotation Review Request]] ==


== Annotation File Pipelines ==
== [[Annotation File Pipelines]] ==
*[[How to run Mike Cherry's filtering script locally before checking the GAF into SVN?]]
 
== Metrics of success (needs review) ==
* [[Proposal for Author Feedback for annotations]]
 
* [[Annotations removed as a result of Annotation QCs]]
 
* [http://go.berkeleybop.org/news4go/node/80| Moved to GAF2.0 format on the 1st June 2010]


= Communication =
= Communication =
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== GO Annotation on Google Drive ==
== GO Annotation on Google Drive ==
* The Gene Ontology uses Google drive to host notes and spreadsheets for annotation working groups and review.
* The Gene Ontology uses Google drive to host notes and spreadsheets for annotation review and annotation working groups.
* The GO Annotation folder on Google Drive may be accessed [https://drive.google.com/drive/folders/0B8kRPmmvPJU3fmNRM2dYTnJmVXg4bG52bTZIdk8wdU53R2F1MDlubG90Rll5LTZqbEVVN3c here].
* The GO Annotation folder on Google Drive may be accessed [https://drive.google.com/drive/folders/0B8kRPmmvPJU3fmNRM2dYTnJmVXg4bG52bTZIdk8wdU53R2F1MDlubG90Rll5LTZqbEVVN3c here].



Revision as of 12:54, 19 January 2018

Group Leaders

David Hill (MGI) and Kimberly Van Auken (WB)

Annotation Documentation

Introduction to Annotation

Ontology-Specific Annotation Guidelines

Molecular Function

Cellular Component

Biological Process

Guide to GO Evidence Codes

Tips to Produce High Quality Annotations

Noctua and GO-CAM Models

Annotation Extensions

Annotation Review Request

Annotation File Pipelines

Communication

Annotation Conference Calls

When

  • Calls are held on the 2nd and 4th Tuesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.

How to Join

  • to join via phone: enter Meeting ID 976175422 after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda

GO-CAM and Noctua Calls

When

  • Calls are held on the 2nd and 4th Wednesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.

How to Join

  • to join via phone: enter Meeting ID 679970729 after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda

GO Annotation on GitHub

  • The Gene Ontology uses an issue tracker hosted on GitHub to record and track annotation issues.
  • The go-annotation repo on GitHub may be accessed here.

GO Annotation on Google Drive

  • The Gene Ontology uses Google drive to host notes and spreadsheets for annotation review and annotation working groups.
  • The GO Annotation folder on Google Drive may be accessed here.

History

Archived Pages