Annotation

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Revision as of 08:12, 13 April 2019 by Pascale (talk | contribs) (Agenda and Minutes)

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Contents

Group Leaders

David Hill (MGI) and Kimberly Van Auken (WB)

Mission statement

  • Educate GOC curators about best annotation practice
  • Enforce annotation rules/policies within GOC
  • Maintain the annotation/evidence code documentation
  • Train/assist new groups with annotations
  • Educate and keep all the annotating groups up-to-date with changes in file formats
  • Keep contributing groups up-to-date with ontology development and how it affects annotations

Annotation Documentation

Overview of GO annotations

Introduction to GO annotations on the GO website

Annotation conventions

Tips to Produce High Quality Annotations

GO Annotation Standard Operating Procedures

Annotation maintenance

Annotation Quality Control

Ontology-Specific Guidelines

Molecular Function

Cellular Component

Biological Process

Annotation Relations

Topic-Specific Guidelines

Annotating from phenotypes

Topic-Specific Guidelines under review

Annotating regulation

Annotating binding

Annotating downstream processes

Annotating ligand-receptor pathways

Response to x annotation guidelines

Multi-species processes

Signaling

Apoptosis Curation Manual

Transcription Annotation Guide (2018)

Transcription Annotation Guide (2012)

MicroRNA_GO_annotation_manual

Guidelines for checkpoints

Guide to GO Evidence Codes

Experiment-Specific Annotation Guidelines - in progress

Noctua and GO-CAM

Noctua Curation Guide

Importing MOD annotations into Noctua

Annotation Extensions

Annotation Quality Control

Communication

Annotation Conference Calls

When

  • Calls are held on the 2nd and 4th Tuesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.
  • Reminder emails are sent out to the go-consortium mailing list; sign up here.

How to Join

  • Please consult the GO calendar for the meeting URL.
  • to join via phone: enter Meeting ID found on the GO calendar after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda

GO-CAM and Noctua Calls

When

  • Calls are held on the 2nd and 4th Wednesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.
  • Reminder emails are sent out to the go-consortium mailing list; sign up here.

How to Join

  • Please consult the GO calendar for the meeting URL.
  • to join via phone: enter Meeting ID found on the GO calendar after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda

GO Annotation on GitHub

  • The Gene Ontology uses an issue tracker hosted on GitHub to record and track annotation issues.
  • The go-annotation repo on GitHub may be accessed here.
  • Contact information for each group that contributes to the consortium is available here

GO Annotation on Google Drive

  • The Gene Ontology uses Google drive to host notes and spreadsheets for annotation review and annotation working groups.
  • The GO Annotation folder on Google Drive may be accessed here.

GO Consortium Mailing List

  • Reminders about conference calls are sent to the go-consortium mailing list.
  • To subscribe to the go-consortium mailing list, please click here.

Focused annotation projects


PAGES TO REVIEW

Intro to GO

To delete, archive, or retire

To review


History

Archived Pages