Annotation Advocacy Roadmap 2011 (Archived): Difference between revisions
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|Phase 1 checks in Production | |Phase 1 checks in Production | ||
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|Encourage IEA methods to remove incorrect annotations from hard QCs (EBI-based workshop; Emily) | |||
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| GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++) | | GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++) | ||
| Stable rules for GO taxon constraints made available | | Stable rules for GO taxon constraints made available | ||
| | | Encourage IEA methods to remove incorrect annotations from soft QCs (EBI-based workshop; Emily) | ||
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| Preparation for GOC meeting | | Preparation for GOC meeting | ||
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| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | | Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | ||
| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | | Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | ||
| | | circulate drafts to GO list | ||
| Preparation for GOC meeting | | Preparation for GOC meeting | ||
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| Feedback to ECO | | Feedback to ECO | ||
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| Preparation for GOC meeting | | Preparation for GOC meeting (table ECO<->GOC discussion?) | ||
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|Preparation for GOC meeting | |Preparation for GOC meeting (table file format development discussion?) | ||
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!Loading PAINT GAF files | !Loading PAINT GAF files | ||
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| Call to remind groups to process these files. | |Call to remind groups to process these files. | ||
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| Preparation for GOC meeting | |Preparation for GOC meeting | ||
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!Loading other GAF files | !Loading other GAF files | ||
| Document Chris's script on annotation inferences (Emily) | | Document Chris's script on annotation inferences (Emily) | ||
| Encourage groups to incorporate inferred annotation sets | | Encourage GOC groups to incorporate inferred annotation sets | ||
| | | Encourage IEA methods to incorporate inferred annotation sets (EBI-based workshop; Emily) | ||
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| Preparation for GOC meeting | | Preparation for GOC meeting | ||
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Revision as of 08:00, 26 January 2011
Project | January 2011 | February 2011 | March 2011 | April 2011 | May 2011 | June 2011 | July 2011 | August 2011 | September 2011 | October 2011 | November 2011 | December 2011 | |
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Jamborees for Reference Genome | Ongoing | Preparation for GOC meeting | |||||||||||
Outreach to new groups | Outreach to Chinese Hamster proteins group (Emily), Inclusion of annotations from NTNU for gastrin gps (Emily) | Preparation for GOC meeting | |||||||||||
Enforce annotation guidelines (absolute checks-annotations are wrong) | Phase 1 checks in Production | Encourage IEA methods to remove incorrect annotations from hard QCs (EBI-based workshop; Emily) | Preparation for GOC meeting | ||||||||||
Soft QC checks (annotations that need to be reviewed but not removed) | GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++) | Stable rules for GO taxon constraints made available | Encourage IEA methods to remove incorrect annotations from soft QCs (EBI-based workshop; Emily) | Preparation for GOC meeting | |||||||||
Documentation of annotation guidelines | Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) | circulate drafts to GO list | Preparation for GOC meeting | ||||||||
Documentation of evidence code guidelines | Documentation for IAS, IMR, ILD from PAINT (Rama) | Feedback to ECO | Feedback to ECO | Preparation for GOC meeting (table ECO<->GOC discussion?) | |||||||||
GAF file format | Documentation for Col. 16 cell type data (Rachael) | Preparation for GOC meeting (table file format development discussion?) | |||||||||||
Loading PAINT GAF files | Call to remind groups to process these files. | Preparation for GOC meeting | |||||||||||
Loading other GAF files | Document Chris's script on annotation inferences (Emily) | Encourage GOC groups to incorporate inferred annotation sets | Encourage IEA methods to incorporate inferred annotation sets (EBI-based workshop; Emily) | Preparation for GOC meeting | |||||||||
Educate curators on ontology development | Signaling talk by Becky Foulger | PAINT and inference annotation pipeline discussion, AmiGO and QuickGO review for curators discussion | ECO discussion (reliant on state of ECO), GO taxon constraints being used to check annotation files discussion | Metabolic pathway annotation discussion, Annotation QC checks being applied to GAF files discussion | Preparation for GOC meeting | ||||||||
AmiGO/QuickGO displays to support curation | AmiGO: RefGen annotation display, QuickGO: GO term taxon constraints | QuickGO: has_part display to be improved. | QuickGO: ancestor chart display of terms to be removed. | Preparation for GOC meeting |