Annotation Advocacy Roadmap 2011 (Archived): Difference between revisions

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|Phase 1 checks in Production
|Phase 1 checks in Production
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|Encourage IEA methods to remove incorrect annotations from hard QCs (EBI-based workshop; Emily)
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| GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++)
| GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++)
| Stable rules for GO taxon constraints made available
| Stable rules for GO taxon constraints made available
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| Encourage IEA methods to remove incorrect annotations from soft QCs (EBI-based workshop; Emily)
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| Preparation for GOC meeting
| Preparation for GOC meeting
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| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
| Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
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| circulate drafts to GO list
| Preparation for GOC meeting
| Preparation for GOC meeting
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| Feedback to ECO
| Feedback to ECO
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| Preparation for GOC meeting
| Preparation for GOC meeting (table ECO<->GOC discussion?)
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|Preparation for GOC meeting
|Preparation for GOC meeting (table file format development discussion?)
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!Loading PAINT GAF files
!Loading PAINT GAF files
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| Call to remind groups to process these files.
|Call to remind groups to process these files.
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| Preparation for GOC meeting
|Preparation for GOC meeting
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!Loading other GAF files
!Loading other GAF files
| Document Chris's script on annotation inferences (Emily)
| Document Chris's script on annotation inferences (Emily)
| Encourage groups to incorporate inferred annotation sets
| Encourage GOC groups to incorporate inferred annotation sets
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| Encourage IEA methods to incorporate inferred annotation sets (EBI-based workshop; Emily)
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| Preparation for GOC meeting
| Preparation for GOC meeting  
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Revision as of 08:00, 26 January 2011

Project January 2011 February 2011 March 2011 April 2011 May 2011 June 2011 July 2011 August 2011 September 2011 October 2011 November 2011 December 2011
Jamborees for Reference Genome Ongoing Preparation for GOC meeting
Outreach to new groups Outreach to Chinese Hamster proteins group (Emily), Inclusion of annotations from NTNU for gastrin gps (Emily) Preparation for GOC meeting
Enforce annotation guidelines (absolute checks-annotations are wrong) Phase 1 checks in Production Encourage IEA methods to remove incorrect annotations from hard QCs (EBI-based workshop; Emily) Preparation for GOC meeting
Soft QC checks (annotations that need to be reviewed but not removed) GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++) Stable rules for GO taxon constraints made available Encourage IEA methods to remove incorrect annotations from soft QCs (EBI-based workshop; Emily) Preparation for GOC meeting
Documentation of annotation guidelines Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) circulate drafts to GO list Preparation for GOC meeting
Documentation of evidence code guidelines Documentation for IAS, IMR, ILD from PAINT (Rama) Feedback to ECO Feedback to ECO Preparation for GOC meeting (table ECO<->GOC discussion?)
GAF file format Documentation for Col. 16 cell type data (Rachael) Preparation for GOC meeting (table file format development discussion?)
Loading PAINT GAF files Call to remind groups to process these files. Preparation for GOC meeting
Loading other GAF files Document Chris's script on annotation inferences (Emily) Encourage GOC groups to incorporate inferred annotation sets Encourage IEA methods to incorporate inferred annotation sets (EBI-based workshop; Emily) Preparation for GOC meeting
Educate curators on ontology development Signaling talk by Becky Foulger PAINT and inference annotation pipeline discussion, AmiGO and QuickGO review for curators discussion ECO discussion (reliant on state of ECO), GO taxon constraints being used to check annotation files discussion Metabolic pathway annotation discussion, Annotation QC checks being applied to GAF files discussion Preparation for GOC meeting
AmiGO/QuickGO displays to support curation AmiGO: RefGen annotation display, QuickGO: GO term taxon constraints QuickGO: has_part display to be improved. QuickGO: ancestor chart display of terms to be removed. Preparation for GOC meeting