Project
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January 2011
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February 2011
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March 2011
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April 2011
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May 2011
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June 2011
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July 2011
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August 2011
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September 2011
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October 2011
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November 2011
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December 2011
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Jamborees for Reference Genome
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Ongoing
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Preparation for GOC meeting
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Outreach to new groups
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Outreach to Chinese Hamster proteins group (Emily), Inclusion of annotations from NTNU for gastrin gps (Emily)
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Preparation for GOC meeting
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Enforce annotation guidelines (absolute checks-annotations are wrong)
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Phase 1 checks in Production
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Preparation for GOC meeting
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Soft QC checks (annotations that need to be reviewed but not removed)
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GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++)
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Stable rules for GO taxon constraints made available
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Preparation for GOC meeting
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Documentation of annotation guidelines
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Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
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Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
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Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia)
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Preparation for GOC meeting
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Documentation of evidence code guidelines
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Documentation for IAS, IMR, ILD from PAINT (Rama)
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Feedback to ECO
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Feedback to ECO
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Preparation for GOC meeting
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GAF file format
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Documentation for Col. 16 cell type data (Rachael)
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Preparation for GOC meeting
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Loading PAINT GAF files
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Call to remind groups to process these files.
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Preparation for GOC meeting
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Loading other GAF files
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Document Chris's script on annotation inferences (Emily)
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Encourage groups to incorporate inferred annotation sets
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Preparation for GOC meeting
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Educate curators on ontology development
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Signaling talk by Becky Foulger
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PAINT and inference annotation pipeline, AmiGO and QuickGO review
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ECO?!, GO taxon constraints being used to check annotation files
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Metabolic pathway annotation, Annotation QC checks being applied to GAF files
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Preparation for GOC meeting
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AmiGO/QuickGO displays
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AmiGO: RefGen annotation display, QuickGO: GO term taxon constraints
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QuickGO: has_part display to be improved.
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QuickGO: ancestor chart display of terms to be removed.
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Preparation for GOC meeting
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