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*[[Chain of Evidence]]- Proposal to represent chain/summation of evidence in an annotation. | *[[Chain of Evidence]]- Proposal to represent chain/summation of evidence in an annotation. | ||
*[[Evidence Code Ontology (ECO)]] - Proposal to represent evidence in an ontology | *[[Evidence Code Ontology (ECO)]] - Proposal to represent evidence in an ontology | ||
==How To?== | |||
How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?<br> | |||
OBO-Edit can load files from the disk OR from a URL.<br> | |||
Choose the "File -> Load..." menu option<br> | |||
Choose the OBO File Adapter<br> | |||
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box<br> | |||
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip) | |||
To see the has_part relationships, use this URL for the extended GO version:<br> | |||
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo | |||
==Annotation Conference calls== | ==Annotation Conference calls== |
Revision as of 14:54, 12 November 2010
Purpose
Group Leaders
Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).
GO Annotation Camp
2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010
Guidelines from Annotation Camp
Activities
- Educate GOC curators about best annotation practice;
- Enforce annotation rules/policies within GOC
- Maintain the annotation/evidence code documentation
- Train/assist new groups with annotations: see How_External_Communities_can_contribute_annotations_to_the_GO_Consortium
- Educate and keep all the annotating groups up-to-date with changes in GAF format
- Keep all curators up-to-date with ontology development and how it affects annotations
- RoadMap (PDF file - provides project goals with time line)
- Roadmap Wiki (editable) format
- Chain of Evidence- Proposal to represent chain/summation of evidence in an annotation.
- Evidence Code Ontology (ECO) - Proposal to represent evidence in an ontology
How To?
How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?
OBO-Edit can load files from the disk OR from a URL.
Choose the "File -> Load..." menu option
Choose the OBO File Adapter
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
To see the has_part relationships, use this URL for the extended GO version:
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
Annotation Conference calls
Monthly Reports
Meeting calendar
Annotation_topics for next meeting
Metrics of success
Process
Issues for the Annotation Group
- Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
Annotations to Catalytic activity with IPI