Annotation Call July 22 2014: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 8: Line 8:


* PMID: 15652479
* PMID: 15652479
** Ste20 localization_dependent_on ?
** ste20 is localized to the nucleus when cells are treated with H2O2.
This was originally captured as:  Ste20   -  nucleus  -  during:GO:0070301 (cellular response to hydrogen peroxide)
 
"During" is not allowed in this case, the suggested replacement is exists_during, which doesn't sound right. Does localization_dependent_on fit here or should we use exists_during?
 


===rehousing annotations to Cell cycle phase term===
===rehousing annotations to Cell cycle phase term===

Revision as of 14:14, 11 July 2014

Agenda

Col-16 Questions

  • PMID: 11486005
    • Snf1 requires Snf4 for full kinase activity - it's unclear how Snf4 contributes to full Snf1 activity) is_regulated_by is not allowed any more. In this case I could use in_presence_of or dependent_on. Which one is correct?
    • Snf1 doesn't phosphorylate Mig1 during during salt stress) not_happens_during is not an option any more. What is the correct relationship for this? independent_of doesn't seem right
  • PMID: 15652479
    • ste20 is localized to the nucleus when cells are treated with H2O2.

This was originally captured as: Ste20 - nucleus - during:GO:0070301 (cellular response to hydrogen peroxide)

"During" is not allowed in this case, the suggested replacement is exists_during, which doesn't sound right. Does localization_dependent_on fit here or should we use exists_during?


rehousing annotations to Cell cycle phase term

We are trying a new approach to help groups rehouse annotations. We will deal with one term at a time. Highlight what the issues are etc so the groups can focus and not be overwhelmed. We can also highlight this term on the GOC website (why we can't have direct anotations to this term etc).

Cell cycle phase should not be used any more for manual annotations.