Annotation Call July 8, 2014

Agenda

New QC checks

• Reference field

For each annotation, should there be either a PMID or a GO_REF as reference, with option to have an internal MOD reference in addition? i.e. it shouldn't be allowed to have an internal reference alone. There doesn't appear to be a hard check on this.

E.g. Gramene have thousands of annotations using an RCA evidence code and an internal Gramene reference, e.g.

GR_protein B8A749 OsI_01599 GO:0005739 GR_REF:7047 RCA C Putative uncharacterized protein protein taxon:39946 20090810 GR

The reference is detailed here; http://archive.gramene.org/db/literature/pub_search?ref_id=7047

GR_protein Q947Z9 OSJNBa0050M22.8 GO:0004252 GR_REF:8030 RCA InterPro:IPR000209 F Putative retroelement protein taxon:39947 20090212 GR

http://archive.gramene.org/db/literature/pub_search?ref_id=8030

• RCA evidence

1 year shelf life for Annotations made with RCA. Groups should update the date or remove the annotations after the one year limit.

Source	filter RCA
gramene_oryza	120035
tair	95741
dictyBase	2513
aspgd	1538
pombase	484
GeneDB_Pfalciparum	7003
PAMGO_Mgrisea	21560
ecocyc	171
goa_pdb	141
mgi	105
GeneDB_Lmajor	50
goa_human	35
goa_ref_human	35
fb	19
GeneDB_Tbrucei	14
wb	10
goa_chicken	6
goa_ref_chicken	4
rgd	3
sgd	1

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