Difference between revisions of "Annotation Conf. Call, April 28, 2015"

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(Agenda)
(Annotation Summary)
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====Annotation Summary====
 
====Annotation Summary====
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{| {{Prettytable}} class='sortable'
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|-
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! Gene
 +
! Term
 +
! ID
 +
! # of Annotations
 +
! Evidence Code Summary
 +
! 'With' field Summary
 +
! Extension Summary
 +
|-
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| cystin
 +
| negative regulation of transcription from RNA polymerase II promoter
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| GO:0000122
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| 3/8
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| IDA-2;IGI-1
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| necdin for the IGI annotation
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| (negatively_regulates-o-has-agent Necdin|negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)
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|-
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| cystin
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| regulation of transcription, DNA-templated
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| GO:0006355
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| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
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| necdin
 +
| regulation of transcription, DNA-templated
 +
| GO:0006355
 +
| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
 +
| cystin
 +
| regulation of transcription from RNA pol II promoter
 +
| GO:0006357
 +
| 1/8
 +
| IDA
 +
|
 +
| (has_regulation_target c-Myc)
 +
|-
 +
| necdin
 +
| regulation of transcription from RNA pol II promoter
 +
| GO:0006357
 +
| 1/8
 +
| IDA
 +
|
 +
| (has_regulation_target c-Myc)
 +
|-
 +
| cystin
 +
| NLS-bearing protein import into nucleus
 +
| GO:0006607
 +
| 1/8
 +
| IMP
 +
|
 +
|
 +
|-
 +
| cystin
 +
| positive regulation of gene expression
 +
| GO:0010628
 +
| 1/8
 +
| IDA-5
 +
|
 +
| (has_regulation_target c-Myc)
 +
|-
 +
| necdin
 +
| positive regulation of gene expression
 +
| GO:0010628
 +
| 1/8
 +
| IDA
 +
|
 +
| (has_regulation_target c-Myc)
 +
|-
 +
| cystin
 +
| positive regulation of transcription from RNA polymerase II promoter
 +
| GO:0045944
 +
| 7/8
 +
| IDA;IGI-1
 +
| necdin for the IGI annotation
 +
| (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
 +
|-
 +
| necdin
 +
| positive regulation of transcription from RNA polymerase II promoter
 +
| GO:0045944
 +
| 7/8
 +
| IDA;IGI-1
 +
| cystin for the IGI annotation
 +
| (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
 +
|-
 +
| cystin
 +
| chromatin
 +
| GO:0000785
 +
| 1/8
 +
| IDA
 +
|
 +
| (coincident_with('GN box' or Myc P1 promoter' SO:new)
 +
|-
 +
| necdin
 +
| chromatin
 +
| GO:0000785
 +
| 1/8
 +
| IDA
 +
|
 +
| (coincident_with('GN box' or Myc P1 promoter' SO:new)
 +
|-
 +
| cystin
 +
| nuclear chromatin
 +
| GO:0000977
 +
| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
 +
| necdin
 +
| nuclear chromatin
 +
| GO:0000977
 +
| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
 +
| cystin
 +
| nucleus
 +
| GO:0005634
 +
| 8/8
 +
| IDA
 +
|
 +
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
 +
|-
 +
| necdin
 +
| nucleus
 +
| GO:0005634
 +
| 7/8
 +
| IDA
 +
|
 +
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
 +
|-
 +
| necdin
 +
| cytoplasm
 +
| GO:0005737
 +
| 4/8
 +
| IDA
 +
|
 +
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
 +
|-
 +
| cystin
 +
| cytoplasm
 +
| GO:0005737
 +
| 5/8
 +
| IDA
 +
|
 +
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(requires_sequence_feature G2A)
 +
|-
 +
| cystin
 +
| cytosol
 +
| GO:0005829
 +
| 4/8
 +
| IDA
 +
|
 +
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
 +
|-|-)

Revision as of 06:08, 28 April 2015


Agenda

Curation Consistency exercise

http://www.ncbi.nlm.nih.gov/pubmed/?term=24349431

Please send your annotations to MGI (David Hill)

Results

8 groups submitted annotations: 2 mgi, Tair, worm, zebrafish, fission yeast, budding yeast, UCL

Annotation Summary

Gene Term ID # of Annotations Evidence Code Summary 'With' field Summary Extension Summary
cystin negative regulation of transcription from RNA polymerase II promoter GO:0000122 3/8 IDA-2;IGI-1 necdin for the IGI annotation negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)
cystin regulation of transcription, DNA-templated GO:0006355 1/8 IDA
necdin regulation of transcription, DNA-templated GO:0006355 1/8 IDA
cystin regulation of transcription from RNA pol II promoter GO:0006357 1/8 IDA (has_regulation_target c-Myc)
necdin regulation of transcription from RNA pol II promoter GO:0006357 1/8 IDA (has_regulation_target c-Myc)
cystin NLS-bearing protein import into nucleus GO:0006607 1/8 IMP
cystin positive regulation of gene expression GO:0010628 1/8 IDA-5 (has_regulation_target c-Myc)
necdin positive regulation of gene expression GO:0010628 1/8 IDA (has_regulation_target c-Myc)
cystin positive regulation of transcription from RNA polymerase II promoter GO:0045944 7/8 IDA;IGI-1 necdin for the IGI annotation (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
necdin positive regulation of transcription from RNA polymerase II promoter GO:0045944 7/8 IDA;IGI-1 cystin for the IGI annotation (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
cystin chromatin GO:0000785 1/8 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
necdin chromatin GO:0000785 1/8 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
cystin nuclear chromatin GO:0000977 1/8 IDA
necdin nuclear chromatin GO:0000977 1/8 IDA
cystin nucleus GO:0005634 8/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
necdin nucleus GO:0005634 7/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
necdin cytoplasm GO:0005737 4/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
cystin cytoplasm GO:0005737 5/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(requires_sequence_feature G2A)
cystin cytosol GO:0005829 4/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)