Difference between revisions of "Annotation Conf. Call, April 28, 2015"

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(Annotation Summary)
(Annotation Summary)
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| IPI
 
| IPI
 
| necdin-4 annotations
 
| necdin-4 annotations
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|(requires_sequence_feature aa 71 to 305; 1 annotation)
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|-
 +
| necdin
 +
| protein C-terminus binding
 +
| GO:0008022
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| 2/8
 +
| IPI
 +
| cystin
 
|(requires_sequence_feature aa 71 to 305; 1 annotation)
 
|(requires_sequence_feature aa 71 to 305; 1 annotation)
 
|-
 
|-
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|  
 
|  
 
|(occurs_in 'kidney inner medula collecting duct epithelial cell'|has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
 
|(occurs_in 'kidney inner medula collecting duct epithelial cell'|has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
 +
|-
 +
| necdin
 +
| sequence specific dna binding
 +
| GO:0043565
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| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
 +
| cystin
 +
| sequence specific dna binding
 +
| GO:0043565
 +
| 1/8
 +
| IDA
 +
|
 +
|
 +
|-
 +
| cystin
 +
| RNA polymerase II regulatory region sequence-specific DNA binding
 +
| GO:0000977
 +
| 1/8
 +
| IDA
 +
|
 +
|(has_direct_inputMyc P1 GN box|occurs_in mouse kidney epithelial cells - mIMCD-3)
 +
|-
 +
| necdin
 +
| RNA polymerase II regulatory region sequence-specific DNA binding
 +
| GO:0000977
 +
| 1/8
 +
| IDA
 +
|
 +
|(has_direct_inputMyc P1 GN box|occurs_in mouse kidney epithelial cells - mIMCD-3)
 +
|-
 +
| cystin
 +
| sequence-specific DNA binding transcription factor activity
 +
| GO:0003700
 +
| 1/8
 +
| IPI
 +
|
 +
| (has_regulation_target Myc)
 +
|-
 +
| necdin
 +
| sequence-specific DNA binding transcription factor activity
 +
| GO:0003700
 +
| 1/8
 +
| IPI
 +
|
 +
| (has_regulation_target Myc)
 
|-|-)
 
|-|-)

Revision as of 06:40, 28 April 2015


Agenda

Curation Consistency exercise

http://www.ncbi.nlm.nih.gov/pubmed/?term=24349431

Please send your annotations to MGI (David Hill)

Results

8 groups submitted annotations: 2 mgi, Tair, worm, zebrafish, fission yeast, budding yeast, UCL

Annotation Summary

Gene Term ID # of Annotations Evidence Code Summary 'With' field Summary Extension Summary
cystin negative regulation of transcription from RNA polymerase II promoter GO:0000122 3/8 IDA-2;IGI-1 necdin for the IGI annotation negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)
cystin regulation of transcription, DNA-templated GO:0006355 1/8 IDA
necdin regulation of transcription, DNA-templated GO:0006355 1/8 IDA
cystin regulation of transcription from RNA pol II promoter GO:0006357 1/8 IDA (has_regulation_target c-Myc)
necdin regulation of transcription from RNA pol II promoter GO:0006357 1/8 IDA (has_regulation_target c-Myc)
cystin NLS-bearing protein import into nucleus GO:0006607 1/8 IMP
cystin positive regulation of gene expression GO:0010628 1/8 IDA (has_regulation_target c-Myc)
necdin positive regulation of gene expression GO:0010628 1/8 IDA (has_regulation_target c-Myc)
cystin positive regulation of transcription from RNA polymerase II promoter GO:0045944 7/8 IDA;IGI-1 necdin for the IGI annotation (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
necdin positive regulation of transcription from RNA polymerase II promoter GO:0045944 7/8 IDA;IGI-1 cystin for the IGI annotation (has_regulation_target c-Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
cystin negative regulation of sequence-specific DNA binding transcription factor activity GO:0043433 3/8 IDA-1;IGI-1;IDA or IPI-1 necdin for the IGI (has_regulation_target necdin; 3 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)
cystin chromatin GO:0000785 1/8 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
necdin chromatin GO:0000785 1/8 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
cystin nuclear chromatin GO:0000977 1/8 IDA
necdin nuclear chromatin GO:0000977 1/8 IDA
cystin nucleus GO:0005634 8/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
necdin nucleus GO:0005634 7/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
necdin cytoplasm GO:0005737 4/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
cystin cytoplasm GO:0005737 5/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(requires_sequence_feature G2A)
cystin cytosol GO:0005829 4/8 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
cystin plasma membrane GO:0005886 1/8 IDA
cystin membrane GO:0016020 7/8 IDA (part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
cystin RNA polymerase II transcription factor complex GO:0090575 3/8 IDA-2;IC-1 (part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
necdin RNA polymerase II transcription factor complex GO:0090575 3/8 IDA-2;IC-1 (part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
necdin protein binding GO:0005515 6/8 IPI cystin-4 annotations (requires_sequence_feature aa 71 to 305; 1 annotation)
cystin protein binding GO:0005515 6/8 IPI necdin-4 annotations (requires_sequence_feature aa 71 to 305; 1 annotation)
necdin protein C-terminus binding GO:0008022 2/8 IPI cystin (requires_sequence_feature aa 71 to 305; 1 annotation)
cystin chromatin binding GO:0003682 3/8 IDA has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
necdin chromatin binding GO:0003682 3/8 IDA has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
necdin sequence specific dna binding GO:0043565 1/8 IDA
cystin sequence specific dna binding GO:0043565 1/8 IDA
cystin RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977 1/8 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
necdin RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977 1/8 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
cystin sequence-specific DNA binding transcription factor activity GO:0003700 1/8 IPI (has_regulation_target Myc)
necdin sequence-specific DNA binding transcription factor activity GO:0003700 1/8 IPI (has_regulation_target Myc)