Difference between revisions of "Annotation Conf. Call, April 28, 2015"

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(Annotation Summary)
(Annotation Summary)
Line 31: Line 31:
 
| negative regulation of transcription from RNA polymerase II promoter
 
| negative regulation of transcription from RNA polymerase II promoter
 
| GO:0000122
 
| GO:0000122
| 3/8
+
| 4/10
 
| IDA-2;IGI-1
 
| IDA-2;IGI-1
 
| necdin for the IGI annotation
 
| necdin for the IGI annotation
| (negatively_regulates-o-has-agent Necdin|negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)
+
| (negatively_regulates-o-has-agent necdin|negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)(has_direct_input necdin)
 
|-
 
|-
 
| cystin
 
| cystin
 
| regulation of transcription, DNA-templated
 
| regulation of transcription, DNA-templated
 
| GO:0006355  
 
| GO:0006355  
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 47: Line 47:
 
| regulation of transcription, DNA-templated
 
| regulation of transcription, DNA-templated
 
| GO:0006355  
 
| GO:0006355  
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
 
|
 
|
 +
|-
 +
| necdin
 +
| positive regulation of transcription, DNA-templated
 +
| GO:0045893
 +
| 1/10
 +
| IDA
 +
|
 +
|(has_regulation_target Myc)
 +
|-
 +
| cystin
 +
| positive regulation of transcription, DNA-templated
 +
| GO:0045893
 +
| 1/10
 +
| IDA
 +
|
 +
|(has_regulation_target Myc)
 +
|-
 +
| cystin
 +
| negative regulation of transcription, DNA-templated
 +
| GO:0045892
 +
| 1/10
 +
| IDA
 +
|
 +
|(has_regulation_target Myc)
 
|-
 
|-
 
| cystin
 
| cystin
 
| regulation of transcription from RNA pol II promoter
 
| regulation of transcription from RNA pol II promoter
 
| GO:0006357  
 
| GO:0006357  
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 63: Line 87:
 
| regulation of transcription from RNA pol II promoter
 
| regulation of transcription from RNA pol II promoter
 
| GO:0006357  
 
| GO:0006357  
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 71: Line 95:
 
| NLS-bearing protein import into nucleus
 
| NLS-bearing protein import into nucleus
 
| GO:0006607  
 
| GO:0006607  
| 1/8
+
| 1/10
 
| IMP
 
| IMP
 
|  
 
|  
Line 79: Line 103:
 
| positive regulation of gene expression
 
| positive regulation of gene expression
 
| GO:0010628
 
| GO:0010628
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 87: Line 111:
 
| positive regulation of gene expression
 
| positive regulation of gene expression
 
| GO:0010628
 
| GO:0010628
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 95: Line 119:
 
| positive regulation of transcription from RNA polymerase II promoter
 
| positive regulation of transcription from RNA polymerase II promoter
 
| GO:0045944
 
| GO:0045944
| 7/8
+
| 8/10
 
| IDA;IGI-1
 
| IDA;IGI-1
 
| necdin for the IGI annotation
 
| necdin for the IGI annotation
| (has_regulation_target Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)  
+
| (has_regulation_target Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)(occurs_in 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| necdin
 
| necdin
 
| positive regulation of transcription from RNA polymerase II promoter
 
| positive regulation of transcription from RNA polymerase II promoter
 
| GO:0045944
 
| GO:0045944
| 7/8
+
| 7/10
 
| IDA;IGI-1
 
| IDA;IGI-1
 
| cystin for the IGI annotation
 
| cystin for the IGI annotation
Line 111: Line 135:
 
| negative regulation of sequence-specific DNA binding transcription factor activity
 
| negative regulation of sequence-specific DNA binding transcription factor activity
 
| GO:0043433
 
| GO:0043433
| 3/8
+
| 3/10
 
| IDA-1;IGI-1;IDA or IPI-1
 
| IDA-1;IGI-1;IDA or IPI-1
 
| necdin for the IGI
 
| necdin for the IGI
Line 127: Line 151:
 
| chromatin
 
| chromatin
 
| GO:0000785
 
| GO:0000785
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 135: Line 159:
 
| chromatin
 
| chromatin
 
| GO:0000785
 
| GO:0000785
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 143: Line 167:
 
| nuclear chromatin
 
| nuclear chromatin
 
| GO:0000977
 
| GO:0000977
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 151: Line 175:
 
| nuclear chromatin
 
| nuclear chromatin
 
| GO:0000977
 
| GO:0000977
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 159: Line 183:
 
| nucleus
 
| nucleus
 
| GO:0005634
 
| GO:0005634
| 8/8
+
| 10/10
 
| IDA
 
| IDA
 
|  
 
|  
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
+
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| necdin
 
| necdin
 
| nucleus
 
| nucleus
 
| GO:0005634
 
| GO:0005634
| 7/8
+
| 9/10
 
| IDA
 
| IDA
 
|  
 
|  
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)
+
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| necdin
 
| necdin
 
| cytoplasm
 
| cytoplasm
 
| GO:0005737
 
| GO:0005737
| 4/8
+
| 6/10
 
| IDA
 
| IDA
 
|  
 
|  
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
+
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| cystin
 
| cystin
 
| cytoplasm
 
| cytoplasm
 
| GO:0005737
 
| GO:0005737
| 5/8
+
| 6/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 191: Line 215:
 
| cytosol
 
| cytosol
 
| GO:0005829
 
| GO:0005829
| 4/8
+
| 5/10
 
| IDA
 
| IDA
 
|  
 
|  
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
+
| (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| cystin
 
| cystin
 
| plasma membrane
 
| plasma membrane
 
| GO:0005886
 
| GO:0005886
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 207: Line 231:
 
| membrane
 
| membrane
 
| GO:0016020
 
| GO:0016020
| 7/8
+
| 9/10
 
| IDA
 
| IDA
 
|  
 
|  
|(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
+
|(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
 
|-
 
|-
 
| cystin
 
| cystin
 
| RNA polymerase II transcription factor complex
 
| RNA polymerase II transcription factor complex
 
| GO:0090575
 
| GO:0090575
| 3/8
+
| 3/10
 
| IDA-2;IC-1
 
| IDA-2;IC-1
 
|  
 
|  
Line 223: Line 247:
 
| RNA polymerase II transcription factor complex
 
| RNA polymerase II transcription factor complex
 
| GO:0090575
 
| GO:0090575
| 3/8
+
| 3/10
 
| IDA-2;IC-1
 
| IDA-2;IC-1
 
|  
 
|  
Line 239: Line 263:
 
| protein binding
 
| protein binding
 
| GO:0005515
 
| GO:0005515
| 6/8
+
| 8/10
 
| IPI
 
| IPI
 
| cystin-4 annotations
 
| cystin-4 annotations
Line 247: Line 271:
 
| protein binding
 
| protein binding
 
| GO:0005515
 
| GO:0005515
| 6/8
+
| 8/10
 
| IPI
 
| IPI
 
| necdin-4 annotations
 
| necdin-4 annotations
Line 255: Line 279:
 
| protein C-terminus binding  
 
| protein C-terminus binding  
 
| GO:0008022
 
| GO:0008022
| 2/8
+
| 2/10
 
| IPI
 
| IPI
 
| cystin
 
| cystin
Line 263: Line 287:
 
| RNA polymerase II transcription factor binding   
 
| RNA polymerase II transcription factor binding   
 
| GO:0001085
 
| GO:0001085
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
| necdin
 
| necdin
Line 271: Line 295:
 
| RNA polymerase II activating transcription factor binding   
 
| RNA polymerase II activating transcription factor binding   
 
| GO:0001102  
 
| GO:0001102  
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
| necdin
 
| necdin
Line 279: Line 303:
 
| RNA polymerase II activating transcription factor binding   
 
| RNA polymerase II activating transcription factor binding   
 
| GO:0001102  
 
| GO:0001102  
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
| cystin
 
| cystin
Line 287: Line 311:
 
| RNA polymerase II repressing transcription factor binding  
 
| RNA polymerase II repressing transcription factor binding  
 
| GO:0001103
 
| GO:0001103
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
| cystin
 
| cystin
Line 295: Line 319:
 
| chromatin binding
 
| chromatin binding
 
| GO:0003682
 
| GO:0003682
| 3/8
+
| 3/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 303: Line 327:
 
| chromatin binding
 
| chromatin binding
 
| GO:0003682
 
| GO:0003682
| 3/8
+
| 3/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 311: Line 335:
 
| sequence specific dna binding
 
| sequence specific dna binding
 
| GO:0043565
 
| GO:0043565
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 319: Line 343:
 
| sequence specific dna binding
 
| sequence specific dna binding
 
| GO:0043565
 
| GO:0043565
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
 
|
 
|
 +
|-
 +
| cystin
 +
| transcription regulatory region sequence-specific DNA binding
 +
| GO:0000976
 +
| 1/10
 +
| IDA
 +
|
 +
|(has_direct_inputMyc P1 GN box|occurs_in mouse kidney epithelial cells - mIMCD-3)
 +
|-
 +
| necdin
 +
| transcription regulatory region sequence-specific DNA binding
 +
| GO:0000976
 +
| 1/10
 +
| IDA
 +
|
 +
|(has_direct_inputMyc P1 GN box|occurs_in mouse kidney epithelial cells - mIMCD-3)
 
|-
 
|-
 
| cystin
 
| cystin
 
| RNA polymerase II regulatory region sequence-specific DNA binding
 
| RNA polymerase II regulatory region sequence-specific DNA binding
 
| GO:0000977
 
| GO:0000977
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 335: Line 375:
 
| RNA polymerase II regulatory region sequence-specific DNA binding
 
| RNA polymerase II regulatory region sequence-specific DNA binding
 
| GO:0000977
 
| GO:0000977
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 343: Line 383:
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding
 
| GO:0000978
 
| GO:0000978
| 2/8
+
| 3/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 351: Line 391:
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding
 
| GO:0000978
 
| GO:0000978
| 2/8
+
| 3/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 359: Line 399:
 
| sequence-specific DNA binding transcription factor activity
 
| sequence-specific DNA binding transcription factor activity
 
| GO:0003700
 
| GO:0003700
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
|  
 
|  
Line 367: Line 407:
 
| sequence-specific DNA binding transcription factor activity
 
| sequence-specific DNA binding transcription factor activity
 
| GO:0003700
 
| GO:0003700
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
|  
 
|  
Line 375: Line 415:
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| GO:0001077
 
| GO:0001077
| 2/8
+
| 2/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 383: Line 423:
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| GO:0001077
 
| GO:0001077
| 2/8
+
| 2/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 391: Line 431:
 
| RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
 
| RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
 
| GO:0001191
 
| GO:0001191
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 399: Line 439:
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
 
| GO:0001227
 
| GO:0001227
| 1/8
+
| 1/10
 
| IDA(IC?)
 
| IDA(IC?)
 
|  
 
|  
Line 407: Line 447:
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| GO:0001228
 
| GO:0001228
| 1/8
+
| 1/10
 
| IDA(IC?)
 
| IDA(IC?)
 
|  
 
|  
Line 415: Line 455:
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
 
| GO:0001228
 
| GO:0001228
| 1/8
+
| 1/10
 
| IDA(IC?)
 
| IDA(IC?)
 
|  
 
|  
Line 431: Line 471:
 
| protein binding
 
| protein binding
 
| GO:0005515
 
| GO:0005515
| 1/8
+
| 1/10
 
| IPI
 
| IPI
 
| Large T antigen
 
| Large T antigen
Line 439: Line 479:
 
| nucleus
 
| nucleus
 
| GO:0005634
 
| GO:0005634
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 447: Line 487:
 
| cytosol
 
| cytosol
 
| GO:0005829
 
| GO:0005829
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
Line 455: Line 495:
 
| membrane
 
| membrane
 
| GO:0016020
 
| GO:0016020
| 1/8
+
| 1/10
 
| IDA
 
| IDA
 
|  
 
|  
 
|
 
|
 
|-|-)
 
|-|-)

Revision as of 10:08, 28 April 2015


Agenda

Curation Consistency exercise

http://www.ncbi.nlm.nih.gov/pubmed/?term=24349431

Please send your annotations to MGI (David Hill)

Results

8 groups submitted 119 annotations: 2 mgi, Tair, worm, zebrafish, fission yeast, budding yeast, UCL

Annotation Summary

Gene Term ID # of Annotations Evidence Code Summary 'With' field Summary Extension Summary
Biological Process Annotations
cystin negative regulation of transcription from RNA polymerase II promoter GO:0000122 4/10 IDA-2;IGI-1 necdin for the IGI annotation negatively_regulates-o-has-input Myc)(has_regulation_target Myc,occurs_in(mouse kidney epithelial cells - mIMCD-3))(has_regulation_target Myc)(has_direct_input necdin)
cystin regulation of transcription, DNA-templated GO:0006355 1/10 IDA
necdin regulation of transcription, DNA-templated GO:0006355 1/10 IDA
necdin positive regulation of transcription, DNA-templated GO:0045893 1/10 IDA (has_regulation_target Myc)
cystin positive regulation of transcription, DNA-templated GO:0045893 1/10 IDA (has_regulation_target Myc)
cystin negative regulation of transcription, DNA-templated GO:0045892 1/10 IDA (has_regulation_target Myc)
cystin regulation of transcription from RNA pol II promoter GO:0006357 1/10 IDA (has_regulation_target Myc)
necdin regulation of transcription from RNA pol II promoter GO:0006357 1/10 IDA (has_regulation_target Myc)
cystin NLS-bearing protein import into nucleus GO:0006607 1/10 IMP
cystin positive regulation of gene expression GO:0010628 1/10 IDA (has_regulation_target Myc)
necdin positive regulation of gene expression GO:0010628 1/10 IDA (has_regulation_target Myc)
cystin positive regulation of transcription from RNA polymerase II promoter GO:0045944 8/10 IDA;IGI-1 necdin for the IGI annotation (has_regulation_target Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)(occurs_in 'kidney collecting duct cell; 1 annotation)
necdin positive regulation of transcription from RNA polymerase II promoter GO:0045944 7/10 IDA;IGI-1 cystin for the IGI annotation (has_regulation_target Myc; 5 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)(in_presence_of Myc; 1 annotation)
cystin negative regulation of sequence-specific DNA binding transcription factor activity GO:0043433 3/10 IDA-1;IGI-1;IDA or IPI-1 necdin for the IGI (has_regulation_target necdin; 3 annotations)(occurs_in(mouse kidney epithelial cells - mIMCD-3; 1 annotation)
Cellular Component Annotations
cystin chromatin GO:0000785 1/10 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
necdin chromatin GO:0000785 1/10 IDA (coincident_with('GN box' or Myc P1 promoter' SO:new)
cystin nuclear chromatin GO:0000977 1/10 IDA
necdin nuclear chromatin GO:0000977 1/10 IDA
cystin nucleus GO:0005634 10/10 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
necdin nucleus GO:0005634 9/10 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(requires_sequence_feature NLS1; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
necdin cytoplasm GO:0005737 6/10 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
cystin cytoplasm GO:0005737 6/10 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(requires_sequence_feature G2A)
cystin cytosol GO:0005829 5/10 IDA (part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
cystin plasma membrane GO:0005886 1/10 IDA
cystin membrane GO:0016020 9/10 IDA (part_of CL:0002518 kidney epithelial cells; 1 annotation)(part_of 'kidney inner medula collecting duct epithelial cell'; 1 annotation)(part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)(part_of 'kidney collecting duct cell; 1 annotation)
cystin RNA polymerase II transcription factor complex GO:0090575 3/10 IDA-2;IC-1 (part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
necdin RNA polymerase II transcription factor complex GO:0090575 3/10 IDA-2;IC-1 (part_of mouse kidney epithelial cells - mIMCD-3; 1 annotation)
Molecular Function Annotations
necdin protein binding GO:0005515 8/10 IPI cystin-4 annotations (requires_sequence_feature aa 71 to 305; 1 annotation)
cystin protein binding GO:0005515 8/10 IPI necdin-4 annotations (requires_sequence_feature aa 71 to 305; 1 annotation)
necdin protein C-terminus binding GO:0008022 2/10 IPI cystin (requires_sequence_feature aa 71 to 305; 1 annotation)
cystin RNA polymerase II transcription factor binding GO:0001085 1/10 IPI necdin
cystin RNA polymerase II activating transcription factor binding GO:0001102 1/10 IPI necdin
necdin RNA polymerase II activating transcription factor binding GO:0001102 1/10 IPI cystin
necdin RNA polymerase II repressing transcription factor binding GO:0001103 1/10 IPI cystin
cystin chromatin binding GO:0003682 3/10 IDA has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
necdin chromatin binding GO:0003682 3/10 IDA has_input (Myc,promoter ; SO:0000167; 1 annotation)(has_direct_input Myc P1 promoter|occurs_in(mouse kidney epithelial cells - mIMCD-3)
necdin sequence specific dna binding GO:0043565 1/10 IDA
cystin sequence specific dna binding GO:0043565 1/10 IDA
cystin transcription regulatory region sequence-specific DNA binding GO:0000976 1/10 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
necdin transcription regulatory region sequence-specific DNA binding GO:0000976 1/10 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
cystin RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977 1/10 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
necdin RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977 1/10 IDA occurs_in mouse kidney epithelial cells - mIMCD-3)
necdin RNA polymerase II core promoter proximal region sequence-specific DNA binding GO:0000978 3/10 IDA (has_direct_input Myc; 1 annotation)(coincident_with 'GN box' or Myc P1 promoter' SO:new)
cystin RNA polymerase II core promoter proximal region sequence-specific DNA binding GO:0000978 3/10 IDA (has_direct_input Myc; 1 annotation)(coincident_with 'GN box' or Myc P1 promoter' SO:new)
cystin sequence-specific DNA binding transcription factor activity GO:0003700 1/10 IPI (has_regulation_target Myc)
necdin sequence-specific DNA binding transcription factor activity GO:0003700 1/10 IPI (has_regulation_target Myc)
necdin RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription GO:0001077 2/10 IDA (has_regulation_target Myc)
cystin RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription GO:0001077 2/10 IDA (has_regulation_target Myc)
cystin RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription GO:0001191 1/10 IDA regulates-o-has-input Myc)
cystin RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription GO:0001227 1/10 IDA(IC?) (has_input Myc,in_presence_of necdin)
cystin RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription GO:0001228 1/10 IDA(IC?) (has_input Myc)
necdin RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription GO:0001228 1/10 IDA(IC?) (has_input Myc)
Other Genes
Trp53 protein binding GO:0005515 1/10 IPI Large T antigen
Cenpa nucleus GO:0005634 1/10 IDA
Capn2 cytosol GO:0005829 1/10 IDA
Cdh3 membrane GO:0016020 1/10 IDA