Annotation Conf. Call, June 26, 2012: Difference between revisions
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[[Category:Annotation Working Group]] | |||
==Agenda== | ==Agenda== | ||
1) Marijn Berg - project on improving protein binding annotations using InterPro domains | Present: | ||
* Rama, Dianna (SGD)<br> | |||
* Emily, Rachael, Yasmin, Paola, Prudence, Tony, Sandra ORchard, Marijn, Jane- EBI | |||
* Dong Hui - TAIR | |||
* Ruth - UCL | |||
* Li, Mary - MGI | |||
* Kimberly - Worm | |||
* Peter - Reactome | |||
* Stan - RGD | |||
1) Marijn Berg - project on [[improving protein binding annotations using InterPro domains]] | |||
2) Hard QC check for IKR annotations. Annotations that violate the following rules will be filtered | 2) Hard QC check for IKR annotations. Annotations that violate the following rules will be filtered | ||
| Line 7: | Line 18: | ||
* Annotations with GO_REF:0000047 should have an ID in column 8 (with/from) | * Annotations with GO_REF:0000047 should have an ID in column 8 (with/from) | ||
3) | 3) Cell fraction terms | ||
Most of us are in agreement to obsolete these terms (http://wiki.geneontology.org/index.php/Annotations_to_Cell_Fraction-type_terms). Please let us know if there are any outstanding issues/concerns. If not we can request the ontology editors to obsolete them. | |||
http://wiki.geneontology.org/index.php/ | |||
==Discussion== | |||
1) | |||
Latest revision as of 16:35, 9 April 2014
Agenda
Present:
- Rama, Dianna (SGD)
- Emily, Rachael, Yasmin, Paola, Prudence, Tony, Sandra ORchard, Marijn, Jane- EBI
- Dong Hui - TAIR
- Ruth - UCL
- Li, Mary - MGI
- Kimberly - Worm
- Peter - Reactome
- Stan - RGD
1) Marijn Berg - project on improving protein binding annotations using InterPro domains
2) Hard QC check for IKR annotations. Annotations that violate the following rules will be filtered
- Annotations with IKR ev.code should have NOT qualifier in Column 4
- Annotations with GO_REF:0000047 should have an ID in column 8 (with/from)
3) Cell fraction terms Most of us are in agreement to obsolete these terms (http://wiki.geneontology.org/index.php/Annotations_to_Cell_Fraction-type_terms). Please let us know if there are any outstanding issues/concerns. If not we can request the ontology editors to obsolete them.
Discussion
1)