Annotation Conf. Call 2015-11-10: Difference between revisions

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=Agenda=
=Agenda=
==Deprecated Annotation Extensions==
==Deprecated Annotation Extension Relations==
*Please see Rachael's email from 2015-10-25
*A number of annotation extension relations have been deprecated.  Three relations, in particular, have quite a few annotations that need to be updated:
**Dependent_on
**In_presence_of
**In_absence_of
*Guidance for updating annotations is available here:  http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations
*The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group)
*Do people have any questions about these updates?
 
==Entity IDs in Annotation Extensions==
==Entity IDs in Annotation Extensions==
==Next Curation Consistency Exercise==
==Next Curation Consistency Exercise==

Revision as of 17:48, 5 November 2015

Agenda

Deprecated Annotation Extension Relations

  • Please see Rachael's email from 2015-10-25
  • A number of annotation extension relations have been deprecated. Three relations, in particular, have quite a few annotations that need to be updated:
    • Dependent_on
    • In_presence_of
    • In_absence_of
  • Guidance for updating annotations is available here: http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations
  • The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group)
  • Do people have any questions about these updates?

Entity IDs in Annotation Extensions

Next Curation Consistency Exercise

  • 2015-11-24
  • TAIR is up next to select a paper
  • Continue with consistency exercises in 2016?
  • Suggestions for changes or improvements?
    • Model each paper in LEGO
  • Groups still to select paper: dictyBase, EBI/UniProt, BBOP (Moni?), NextProt, anyone else?

Minutes