Annotation Conf. Call 2015-11-10: Difference between revisions
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*Guidance for updating annotations is available here: http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations | *Guidance for updating annotations is available here: http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations | ||
*The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group) | *The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group) | ||
* | *Please go through your annotations by the end of this year, and collate any cases where you think the guidelines may not accommodate the experiment you are trying to annotate. | ||
*We will collate and discuss any outstanding issue on the first call of the new year, January 12th, 2016. | |||
==Entity IDs in Annotation Extensions== | ==Entity IDs in Annotation Extensions== |
Revision as of 12:22, 6 November 2015
Agenda
Deprecated Annotation Extension Relations
- Please see Rachael's email from 2015-10-25
- A number of annotation extension relations have been deprecated. Three relations, in particular, have quite a few annotations that need to be updated:
- Dependent_on
- In_presence_of
- In_absence_of
- Guidance for updating annotations is available here: http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations
- The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group)
- Please go through your annotations by the end of this year, and collate any cases where you think the guidelines may not accommodate the experiment you are trying to annotate.
- We will collate and discuss any outstanding issue on the first call of the new year, January 12th, 2016.
Entity IDs in Annotation Extensions
Next Curation Consistency Exercise
- 2015-11-24
- TAIR is up next to select a paper
- Continue with consistency exercises in 2016?
- Suggestions for changes or improvements?
- Model each paper in LEGO
- Groups still to select paper: dictyBase, EBI/UniProt, BBOP (Moni?), NextProt, USC, AgBase, anyone else?