Annotation Conf. Call 2015-11-10

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Agenda

Deprecated Annotation Extension Relations

  • Please see Rachael's email from 2015-10-25
  • A number of annotation extension relations have been deprecated. Three relations, in particular, have quite a few annotations that need to be updated:
    • Dependent_on
    • In_presence_of
    • In_absence_of
  • Guidance for updating annotations is available here: http://wiki.geneontology.org/index.php?title=Guidance_for_updating_deprecated_Annotation_Extension_Relations
  • The wiki page also contains a link, at the bottom of the General Guidance section, to a spreadsheet that lists each annotation by Source (curation group)
  • Please go through your annotations by the end of this year, and collate any cases where you think the guidelines may not accommodate the experiment you are trying to annotate.
  • We will collate and discuss any outstanding issue on the first call of the new year, January 12th, 2016.

Entity IDs in Annotation Extensions

Next Curation Consistency Exercise

  • 2015-11-24
  • TAIR is up next to select a paper
  • Continue with consistency exercises in 2016?
  • Suggestions for changes or improvements?
    • Model each paper in LEGO
  • Groups still to select paper: dictyBase, EBI/UniProt, BBOP (Moni?), NextProt, USC, AgBase, anyone else?

Minutes