Annotation Conf. Call 2016-03-08: Difference between revisions
Line 20: | Line 20: | ||
=Minutes= | =Minutes= | ||
=== IC Annotations from ISS Annotations === | |||
It was agreed (and no one objected) to allow the creation of IC annotations based on one or more supporting ISS annotations. | It was agreed (and no one objected) to allow the creation of IC annotations based on one or more supporting ISS annotations. | ||
It was decided that IC annotations from ISS need a separate reference (not GO:REF36) in case we want to distinguish them at any point. | |||
David Hill brought up the problem of tracing statements where both the GO term and the annotation extension are used to make the IC annotation (in the first example in the doc the Lmx1b transcription factor is upregulating transcription of the Wnt1 gene). This is true for all IC annotations, not just those derived from ISS annotations. Melanie responded that they are working towards a new GPAD format that will allow the source to be traced- we need something like this or to be able to record an annotation ID (not just a GO term) for full traceability. But for the short-term curators could add an annotation note in their tool to specify the exact source fo the supporting IC evidence. | David Hill brought up the problem of tracing statements where both the GO term and the annotation extension are used to make the IC annotation (in the first example in the doc the Lmx1b transcription factor is upregulating transcription of the Wnt1 gene). This is true for all IC annotations, not just those derived from ISS annotations. Melanie responded that they are working towards a new GPAD format that will allow the source to be traced- we need something like this or to be able to record an annotation ID (not just a GO term) for full traceability. But for the short-term curators could add an annotation note in their tool to specify the exact source fo the supporting IC evidence. | ||
Action Items: Rebecca will send a proposed wording for a new ICC-from-ISS GO:Ref to the annotation managers, and IC documentation to add to the website (DONE). | |||
[[Category: Annotation Working Group]] | [[Category: Annotation Working Group]] |
Revision as of 13:33, 8 March 2016
Bluejeans URL
- Recurring meeting URL: https://bluejeans.com/993661940
Agenda
Ontology Request Guidelines
- When curators open the page to submit an ontology request, a set of guidelines is now available:
- https://github.com/geneontology/go-ontology/issues
- Go to top left, click on green box 'New issue'
- See yellow-ish banner at top of page 'Please review the guidelines for contributing to this repository.'
- Sends to https://github.com/geneontology/go-ontology/blob/master/CONTRIBUTING.md
- For reference: this was discussed at the last editors call: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-03-03#Follow-up:_strategy_for_ontology_requests
IC Annotations from ISS Annotations
- Proposal from Rebecca, UCL
Media:IC_from_ISS_Annotation_Call.docx
Next Annotation Consistency Exercise - March 22, 2016
- Synaptic scaffolding protein SYD-2 clusters and activates kinesin-3 UNC-104 in C. elegans.
- Please send annotations to Kimberly by 5pm EST Monday, March 21st
Minutes
IC Annotations from ISS Annotations
It was agreed (and no one objected) to allow the creation of IC annotations based on one or more supporting ISS annotations.
It was decided that IC annotations from ISS need a separate reference (not GO:REF36) in case we want to distinguish them at any point.
David Hill brought up the problem of tracing statements where both the GO term and the annotation extension are used to make the IC annotation (in the first example in the doc the Lmx1b transcription factor is upregulating transcription of the Wnt1 gene). This is true for all IC annotations, not just those derived from ISS annotations. Melanie responded that they are working towards a new GPAD format that will allow the source to be traced- we need something like this or to be able to record an annotation ID (not just a GO term) for full traceability. But for the short-term curators could add an annotation note in their tool to specify the exact source fo the supporting IC evidence.
Action Items: Rebecca will send a proposed wording for a new ICC-from-ISS GO:Ref to the annotation managers, and IC documentation to add to the website (DONE).