Annotation Conf. Call 2016-08-23: Difference between revisions
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| SPP1 | |||
| GO:0051571 positive regulation of histone H3-K4 methylation | |||
| IMP | |||
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| SPP1 | |||
| GO:1903342 negative regulation of meiotic DNA double-strand break formation | |||
| IMP | |||
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| occurs_at PES4, ARG3 | |||
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| SPP1 | |||
| GO:1903343 positive regulation of meiotic DNA double-strand break formation | |||
| IMP | |||
| | |||
| occurs_at CYS3, BUD23, DEP1, LSB3 | |||
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| SPP1 | | SPP1 |
Revision as of 10:19, 23 August 2016
Bluejeans URL: https://bluejeans.com/993661940
Agenda
Upcoming Meetings
Next GOC Meeting - USC, Los Angeles, CA, November 4-6, 2016
- Please indicate on the Meeting Logistics Page if you plan to come.
- We are now planning a one-day Noctua/LEGO training session for the Monday (November 7th) following the general consortium meeting. Please indicate on the logistics page if you are definitely staying for that so Paul T. can arrange for a meeting room.
UK LEGO/Noctua Training
- There will be a LEGO/Noctua training session in Hinxton, UK from Wednesday, 8/31 - Friday, 9/2.
- Logistics
- Agenda
Annotation Consistency Exercise
http://www.ncbi.nlm.nih.gov/pubmed/23246437
Gene Name (col 2) | GO ID and term name (col 5) | Evidence (col 7) | With/From (col 8) | Annotation Extension (col 16) |
---|---|---|---|---|
SET1 | GO:1990837 sequence-specific double-stranded DNA binding | IMP | has_direct_input SO:0000339 recombination_hotspot, happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:0010844 recombination hotspot binding | IMP | has_direct_input SO:0000955 double_stranded_DNA_chromosome, happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:0051568 histone H3-K4 methylation | IDA | ||
SET1 | GO:0044648 histone H3-K4 dimethylation | IMP | ||
SET1 | GO:0044648 histone H3-K4 dimethylation | IMP | positively_regulates GO:0042138: meiotic DNA double-strand break formation | |
SET1 | GO:0044648 histone H3-K4 dimethylation | IMP | happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:0080182 histone H3-K4 trimethylation | IDA | ||
SET1 | GO:0080182 histone H3-K4 trimethylation | IMP | ||
SET1 | GO:0080182 histone H3-K4 trimethylation | IMP | happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:0006279 premeiotic DNA replication | IMP | happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:0010780 meiotic DNA double-strand break formation | IMP | ||
SET1 | GO:1903341 regulation of meiotic DNA double-strand break formation | IMP | ||
SET1 | GO:1903341 regulation of meiotic DNA double-strand break formation | IMP | happens_during GO:0051321 meiotic cell cycle | |
SET1 | GO:1903343 positive regulation of meiotic DNA double-strand break formation | IDA | ||
SET1 | GO:1903343 positive regulation of meiotic DNA double-strand break formation | IMP | occurs_at CYS3, BUD23, DEP1, LSB3 | |
SET1 | GO:1903343 positive regulation of meiotic DNA double-strand break formation | IGI | w/HHT1, HHT2 | |
SET1 | GO:1903342 negative regulation of meiotic DNA double-strand break formation | IMP | occurs_at PES4, ARG3 | |
SET1 | GO:0010674 negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle | IMP | regulates_expression_of PES4, ARG3 | |
SET1 | GO:0071168 protein localization to chromatin | IC | from/ GO:0000785 chromatin, GO:1903343 positive regulation of meiotic DNA double-strand break formation | has_input SPP1 |
SET1 | GO:0071168 protein localization to chromatin | IMP | occurs_at SO:0000502 transcribed region, has_inut SPP1, happens_during GO:0000278 mitotic cell cycle | |
SET1 | NTR NTR: chromosome axis | IMP | happens_during GO:0051321 meiotic cell cycle, conincident_with SO:0000339 recombination_hotspot | |
SWD3 | GO:0051568 histone H3-K4 methylation | IMP | ||
SWD3 | GO:0044648 histone H3-K4 dimethylation | IMP | ||
SWD3 | GO:0080182 histone H3-K4 trimethylation | IMP | ||
SWD3 | GO:0044648 histone H3-K4 dimethylation | IMP | positively_regulates GO:0042138: meiotic DNA double-strand break formation | |
SWD3 | GO:0080182 histone H3-K4 trimethylation | IMP | positively_regulates GO:0042138: meiotic DNA double-strand break formation | |
SWD3 | GO:0051569 regulation of histone H3-K4 methylation | IMP | ||
SWD3 | GO:0010780 meiotic DNA double-strand break formation | IMP | ||
SWD3 | GO:1903341 regulation of meiotic DNA double-strand break formation | IMP | ||
SWD3 | GO:1903342 negative regulation of meiotic DNA double-strand break formation | IMP | occurs_at PES4, ARG3 | |
SWD3 | GO:1903343 positive regulation of meiotic DNA double-strand break formation | IMP | occurs_at CYS3, BUD23, DEP1, LSB3 | |
SPP1 | GO:0044648 histone H3-K4 dimethylation | IMP | ||
SPP1 | GO:0080182 histone H3-K4 trimethylation | IMP | ||
SPP1 | GO:0044648 histone H3-K4 dimethylation | IMP | positively_regulates GO:0042138: meiotic DNA double-strand break formation | |
SPP1 | GO:0080182 histone H3-K4 trimethylation | IMP | positively_regulates GO:0042138: meiotic DNA double-strand break formation | |
SPP1 | GO:0051569 regulation of histone H3-K4 methylation | IMP | ||
SPP1 | GO:0051571 positive regulation of histone H3-K4 methylation | IMP | ||
SPP1 | GO:1903342 negative regulation of meiotic DNA double-strand break formation | IMP | occurs_at PES4, ARG3 | |
SPP1 | GO:1903343 positive regulation of meiotic DNA double-strand break formation | IMP | occurs_at CYS3, BUD23, DEP1, LSB3 | |
SPP1 | GO:NTR chromosome axis | IDA | happens_during GO:0051321 meiotic cell cycle | |
SPP1 | GO:0003682 chromatin binding | IDA | ||
SPP1 | GO:0003682 chromatin binding | IDA | occurs_at SO:0000502 transcribed region, happens_during GO:0000278 mitotic cell cycle | |
SPP1 | GO:0005515 protein binding | IPI | w/REC107 (MER2) | happens_during GO:0051321 meiotic cell cycle |
SPP1 | GO:0005515 protein binding | IDA | has_input REC107 (MER2), happens_during GO:0051321 meiotic cell cycle | |
SPP1 | GO:0005515 protein binding | IPI | w/REC107 (MER2) | positively_regulates NTR: chromosome axis binding, happens_during GO:0051321 meiotic cell cycle |
SPP1 | GO:0030674 protein binding, bridging | IC | from GO:0005515 protein_binding, GO:0035064 methylated histone binding | happens_during GO:0051321 meiotic cell cycle |
SPP1 | GO:0035064 methylated histone binding | TAS | occurs_at SO:0000170 RNA polymerase II promoter | |
SPP1 | GO:0010780 meiotic DNA double-strand break formation | IMP | ||
SPP1 | GO:1903341 regulation of meiotic DNA double-strand break formation | IMP | ||
SPP1 | GO:0034613 cellular protein localization | IMP | has_direct_input SPO11, occurs_at GO:0035861 site of double-strand break | |
SPP1 | GO:new regulation of protein localization to site of double-strand break | IMP | has_regulation_target SPO11 | |
SPP1 | GO:0000790 nuclear chromatin | IDA | coincident_with SO:0000316 CDS | |
SPP1 | GO:0000790 nuclear chromatin | IDA | exists_during GO:0000278 mitotic cell cycle | |
SPP1 | GO:0000785 chromatin | IDA | coincident_with RPS0A and ADH1, part_of CL:0000334 vegetative cell (sensu Fungi) | |
SPP1 | NTR NTR: chromosome axis | IDA | happens_during GO:0051321 meiotic cell cycle | |
SPP1 | GO:new chromosome axis | IDA | exists_during GO:0051321 meiotic cell cycle | |
SPP1 | GO:new [condensed?] chromosome axis | IDA | exists_during GO:0051321 meiotic cell cycle | |
SPP1 | NOT GO:0035861 site of double-strand break | IDA | ||
SPP1 | GO:0048188 Set1C/COMPASS complex | NAS | ||
REC107 (MER2) | GO:0005515 protein binding | IPI | w/SPP1 | happens_during GO:0051321 meiotic cell cycle |
REC107 (MER2) | GO:0005515 protein binding | IDA | has_input SPP1, happens_during GO:0051321 meiotic cell cycle | |
REC107 (MER2) | GO:0005515 protein binding | IPI | w/SPP1 | positively_regulates NTR: chromosome axis binding, happens_during GO:0051321 meiotic cell cycle |
REC107 (MER2) | GO:0034613 cellular protein localization | IMP | happens_during GO:0051321 meiotic cell cycle, has_direct_input SPP1, occurs_at GO:NTR chromosome axis | |
REC107 (MER2) | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
REC107 (MER2) | GO:new [condensed?] chromosome axis | IDA | exists_during GO:0051321 meiotic cell cycle | |
REC104 | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
REC102 | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
REC114 | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
MEI4 | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
SKI8 | GO:0042138 meiotic DNA double-strand break formation | IMP | ||
SPO11 | GO:0035861 site of double-strand break | IDA | ||
SPO11 | GO:0035861 site of double-strand break | IDA | exists_during GO:0051321 meiotic cell cycle | |
SPO11 | GO:0035861 site of double-strand break | IDA | happens_during GO:0051321 meiotic cell cycle |
Noctua model: http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001783?barista_token=lyg8ba4blv2702bcpp9a#