Annotation Conf. Call 2017-01-10

Bluejeans

• https://bluejeans.com/993661940
• to join via phone: enter Meeting ID 993661940 after dialing in
  • from US: +1.408.740.7256 or +1.888.240.2560
  • from UK: +44.203.608.5256
  • from Switzerland: +41.81.588.0256

Agenda

Review of Jenkins Pipeline

View GAF builds in Jenkins

• GAF checks
  • Relevant github issues:
    • Jenkins GAF checks with red status cannot be inspected
    • GOA annotation checks on GAFs are more stringent than Jenkins checks (should be same?)
• Inferred Annotations (Annotations Created by Logical Inference)
  • Inter-ontology links
    • Source: GOC
    • PomBase inferred GAF missing annotations
    • Remove all single-step BP classes
  • Annotations inferred from annotation extensions
    • Source: GOC-OWL
    • GOC-OWL inference pipeline concerns
    • Change assigned_by for GOC OWL inferences to be able to distinguish from F-P
  • Evidence Codes used for Inferred Annotations
    • GOC-OWL inference pipeline concerns
    • Add inter-ontology links to go-basic and stop materializing inferred annotations from inter-ontology links
    • Remove constraint on IEP only applying to BP

Working Groups

• At the November 2016 USC meeting, we agreed to establish working groups for several topics.
• If they haven't already, groups need to set up meeting schedule and agendas
  • Annotation Guidelines for High Throughput Experiments
    • Helen Attrill (FB)
    • Stacia Engel (SGD)
    • Pascale Gaudet (SIB)
    • Ruth Lovering (UCL)
    • Kimberly Van Auken (WB)
  • Working group to finalize transcription decision tree
    • Marcio Acencio (NTNU)
    • Karen Christie (MGI)
    • Rachael Huntely (UCL)
  • Working group to review use of ECO codes
    • David Hill (MGI)
    • Note also that there is an ECO workshop at this year's ISB meeting