Difference between revisions of "Annotation Conf. Call 2017-03-14"

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(Software, Infrastructure)
(Annotation Review)
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== Annotation Review ==
 
== Annotation Review ==
*Review of IMP annotations for possible use of new qualifiers - What is the scope of the problem?
+
*Review of IMP annotations for possible use of new qualifiers
 +
**What is the scope of the issue?  Are there general principles we can derive to help with applying new qualifiers to legacy annotations?
 
**[https://docs.google.com/spreadsheets/d/1HbvdyKmRI7Zhj6qPqVEsvyN6cMwahsf4aLa54fiROvs BP_Annotation_Qualifiers_Spreadsheet]
 
**[https://docs.google.com/spreadsheets/d/1HbvdyKmRI7Zhj6qPqVEsvyN6cMwahsf4aLa54fiROvs BP_Annotation_Qualifiers_Spreadsheet]
 +
**Explore effects on enrichment analyses
 
*Single-step biological processes - review annotations to help assess impact if such terms are obsoleted
 
*Single-step biological processes - review annotations to help assess impact if such terms are obsoleted
 
**[https://github.com/geneontology/go-ontology/issues/12859 Github ticket 'Remove all single-step BP classes']
 
**[https://github.com/geneontology/go-ontology/issues/12859 Github ticket 'Remove all single-step BP classes']

Revision as of 08:43, 10 March 2017

Bluejeans URL

https://bluejeans.com/993661940

Agenda

GO Meeting Reminder

Software, Infrastructure

  • GO-Help, Ontology migration to github, Jenkins pipeline - Chris, Seth, Moni
  • Migration of annotation files to github at some point in the future?

Annotation Review

  • Review of IMP annotations for possible use of new qualifiers
    • What is the scope of the issue? Are there general principles we can derive to help with applying new qualifiers to legacy annotations?
    • BP_Annotation_Qualifiers_Spreadsheet
    • Explore effects on enrichment analyses
  • Single-step biological processes - review annotations to help assess impact if such terms are obsoleted

Working Groups

  • Transcription factor decision tree
  • Annotating high throughput experiments