Annotation Conf. Call 2017-03-14: Difference between revisions
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== Annotation Review == | == Annotation Review == | ||
*Review of IMP annotations for possible use of new qualifiers | *Review of IMP annotations for possible use of new qualifiers | ||
**What is the scope of the issue? Are there general principles we can derive to help with applying new qualifiers to legacy annotations? | |||
**[https://docs.google.com/spreadsheets/d/1HbvdyKmRI7Zhj6qPqVEsvyN6cMwahsf4aLa54fiROvs BP_Annotation_Qualifiers_Spreadsheet] | **[https://docs.google.com/spreadsheets/d/1HbvdyKmRI7Zhj6qPqVEsvyN6cMwahsf4aLa54fiROvs BP_Annotation_Qualifiers_Spreadsheet] | ||
**Explore effects on enrichment analyses | |||
*Single-step biological processes - review annotations to help assess impact if such terms are obsoleted | *Single-step biological processes - review annotations to help assess impact if such terms are obsoleted | ||
**[https://github.com/geneontology/go-ontology/issues/12859 Github ticket 'Remove all single-step BP classes'] | **[https://github.com/geneontology/go-ontology/issues/12859 Github ticket 'Remove all single-step BP classes'] | ||
Revision as of 11:43, 10 March 2017
Bluejeans URL
https://bluejeans.com/993661940
Agenda
GO Meeting Reminder
- Corvallis, Oregon - June 1-3rd, Noctua Workshop - June 4th, Reactome Workshop - June 5th
- Meeting Registration Site
- Meeting Agenda
Software, Infrastructure
- GO-Help, Ontology migration to github, Jenkins pipeline - Chris, Seth, Moni
- Migration of annotation files to github at some point in the future?
Annotation Review
- Review of IMP annotations for possible use of new qualifiers
- What is the scope of the issue? Are there general principles we can derive to help with applying new qualifiers to legacy annotations?
- BP_Annotation_Qualifiers_Spreadsheet
- Explore effects on enrichment analyses
- Single-step biological processes - review annotations to help assess impact if such terms are obsoleted
- Github ticket 'Remove all single-step BP classes'
- What terms could possibly be considered single-step processes?
- Look at MF-BP links
Working Groups
- Transcription factor decision tree
- Annotating high throughput experiments