Annotation Conf. Call 2017-04-11: Difference between revisions
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*Also, please add your name to the table at the bottom of the agenda wiki page | *Also, please add your name to the table at the bottom of the agenda wiki page | ||
*Agenda is currently a bit free-form, please add your items and the PIs will review and structure | *Agenda is currently a bit free-form, please add your items and the PIs will review and structure | ||
*Next ontology editors call, editors will discuss what to present in Oregon | |||
== Redundant F-P Links == | |||
*AI: Create a new ticket, since the existing one has veered in several directions and is a bit confusing | |||
*F-P links were always intended to just create annotations, using the same evidence code, for terms linked via the ontology | |||
*Some duplicates do get generated | |||
**MGI removes exact duplicates | |||
*PomBase noticed that less specific terms were being generated | |||
*Should this be corrected in the code that generates the F-P propagated term? | |||
**Suzi - yes | |||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] | ||
Revision as of 11:14, 11 April 2017
Bluejeans URL
https://bluejeans.com/993661940
Agenda
GOC Meeting, Corvallis, Oregon, June 1-3 (plus workshops June 4-5), 2017
- Logistics: https://sites.google.com/view/goc2017
- 2017 Corvallis GOC Meeting Agenda
- Please check the table at the bottom of the Agenda page and add your name, if not already there. Also please double-check the information associated with your entry.
Jenkins Pipeline
PAINT Annotation Queries/Disputes Now in Github
- Tracking PAINT-related annotation queries/disputes in github
- Example
Ontology Terms that Refer to Specific Gene Products
- Ticket on geneontology/go-ontology
- Proposal is to remove ontology terms that refer to specific gene products
Proposed new Biological Process Annotation Qualifiers
- Use of Regulation Terms
- Gene products annotated to regulation term but no MF annotation
- Gene products annotated to both a process and regulation of that process
Working Groups
HTP Experiments
- Held first call on 2017-03-21
Transcription Decision Tree
- Reminder to review latest version linked from github ticket
Minutes
- On call: Alice, Chris, Emily, George, Guilia, Helen, Judy, Midori, Moni, Pascale, Petra, Rachael, Shur-Jen, Stan, Tanya, Terry, Suzi
Call Agendas on Github
- Will post meeting agenda on github so we can coordinate tickets with actionable items from calls/meetings
GOC Meeting - Corvallis, Oregon, June
- Register on Pankaj's Google site
- Also, please add your name to the table at the bottom of the agenda wiki page
- Agenda is currently a bit free-form, please add your items and the PIs will review and structure
- Next ontology editors call, editors will discuss what to present in Oregon
Redundant F-P Links
- AI: Create a new ticket, since the existing one has veered in several directions and is a bit confusing
- F-P links were always intended to just create annotations, using the same evidence code, for terms linked via the ontology
- Some duplicates do get generated
- MGI removes exact duplicates
- PomBase noticed that less specific terms were being generated
- Should this be corrected in the code that generates the F-P propagated term?
- Suzi - yes