Annotation Conf. Call 2017-08-22

Meeting URL

• https://stanford.zoom.us/j/976175422

Agenda

Cambridge Meeting, October, 2017

• 2017 Cambridge GOC Meeting Logistics
  • Registrration - confirm pay in cash
• 2017 Cambridge GOC Meeting Agenda
  • Wednesday afternoon hands-on/workshop session. Suggestions:
    • Creating a biologically useful slim (complete coverage by aspect, biologically useful terms i.e sufficient granularity, avoiding single step process terms (i.e functions), different slims for different purposes.
    • Displaying GO annotations (non redundantly, in MODs, in AmiGO, in AGR), general data presentation.
      • Conventional annotation display as well as GO-CAM model display
    • Good annotation practice: phenotype vs process,
    • Representing biologists’ view of biology: author intent & protein domains; IDA v IC v New evidence code
• 2017 Cambridge GOC Signalling Workshop

Signaling Project

• Update on progress to date, github tickets
  • Wnt - Giulia, Helen, Kimberly
    • Google spreadsheet with annotation, ontology analysis
    • Google doc for crystallizing github tickets
  • MAPK - David H. and Sabrina
    • Examining gene products annotated to the process with no experimental support for known MFs
    • Thinking about how to define the beginning and parts of the pathway
  • Ca2+ Signaling
    • Fertilization - Penelope
  • GPCR - Pascale, Petra
    • Some ontology tickets have been addressed
    • Needs global annotation review
    • Needs GO-CAM model
  • Reminder - discussion on specific github tickets, not on project page

Minutes

• On call: