Annotation Conf. Call 2017-08-22: Difference between revisions

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****Author intent & protein domains; IDA v IC v New evidence code
****Author intent & protein domains; IDA v IC v New evidence code
== 2017 Cambridge GOC Signalling Workshop, October 1, 2017 ==
== 2017 Cambridge GOC Signalling Workshop, October 1, 2017 ==
*[[2017 Cambridge GOC Signalling Workshop, October 1, 2017]]  
*[2017 Cambridge GOC Signalling Workshop, October 1, 2017]


== Signaling Project ==
== Signaling Project ==

Revision as of 16:12, 21 August 2017

Meeting URL

Agenda

Cambridge Meeting, October 2-4, 2017

  • 2017 Cambridge GOC Meeting Logistics
    • Registrration - confirm pay in cash
  • 2017 Cambridge GOC Meeting Agenda
    • Poster session Monday night
    • Wednesday afternoon hands-on/workshop session. Suggestions:
      • Creating a biologically useful slim (complete coverage by aspect, biologically useful terms i.e sufficient granularity, avoiding single step process terms (i.e functions), different slims for different purposes.
        • Presentations from Val (PomBase), Mary Dolan (MGI)
      • Displaying GO annotations (non redundantly, in MODs, in AmiGO, in AGR), general data presentation.
        • Conventional annotation display as well as GO-CAM model display
      • Good annotation practice: phenotype vs process
      • Representing biologists’ view of biology
        • Author intent & protein domains; IDA v IC v New evidence code

2017 Cambridge GOC Signalling Workshop, October 1, 2017

  • [2017 Cambridge GOC Signalling Workshop, October 1, 2017]

Signaling Project

  • Update on progress to date, github tickets
    • Wnt - Giulia, Helen, Kimberly
    • MAPK - David H. and Sabrina
      • Examining gene products annotated to the process with no experimental support for known MFs
      • Thinking about how to define the beginning and parts of the pathway
    • Ca2+ Signaling
      • Fertilization - Penelope
    • GPCR - Pascale, Petra
      • Some ontology tickets have been addressed
      • Needs global annotation review
      • Needs GO-CAM model
    • Reminder - discussion on specific github tickets, not on project page

Minutes

  • On call: