Annotation Conf. Call 2017-09-12: Difference between revisions
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***receptor agonist activity (GO:0048018) re-named receptor ligand activity and new definition (http://amigo.geneontology.org/amigo/term/GO:0048018). Also removed relationships to ‘signal transduction' & 'receptor activator activity' | ***receptor agonist activity (GO:0048018) re-named receptor ligand activity and new definition (http://amigo.geneontology.org/amigo/term/GO:0048018). Also removed relationships to ‘signal transduction' & 'receptor activator activity' | ||
*** Kimberly has checked usage of receptor agonist activity in curation corresponds to ligand as defined above and looking at documenting criteria for using this term. | *** Kimberly has checked usage of receptor agonist activity in curation corresponds to ligand as defined above and looking at documenting criteria for using this term. | ||
**'receptor activator activity' | **Review of 'receptor activator activity' | ||
***Inconsistent use. ~20 experimental annotations https://docs.google.com/spreadsheets/d/15HcC6LFgOhA-BdQHvKMRjk3e-uIaGvitD5xH8Qzdkpk/edit#gid=233101787, different activities/processes have been annotated with this term. (make ticket) | |||
**Review annotations of beta-catenin to DNA binding terms (make ticket) | |||
**Tickets: for merging ‘frizzled-2 binding’ with ‘frizzled binding’ https://github.com/geneontology/go-ontology/issues/14182, and moving 'smoothened binding' from under 'frizzled binding' https://github.com/geneontology/go-ontology/issues/14182. | |||
**collecting publications for documentation to illustrate term use and assays https://docs.google.com/document/d/1S6pjVaSpqwDHB3Q-2JBf35BrgOD-Z9z3w8WjijWvjw8/edit | |||
* Ca2+ (Penelope away) | * Ca2+ (Penelope away) | ||
Revision as of 05:44, 12 September 2017
Meeting URL
Agenda
Update on Signaling Projects
github/go-annotation Signaling Projects page
- JAK/STAT
- GPCR
- MAPK - David, Sabrina
- Wnt - Helen (Kimberly away)
- receptor ligand activity #14120 https://github.com/geneontology/go-ontology/issues/14120
- receptor agonist activity (GO:0048018) re-named receptor ligand activity and new definition (http://amigo.geneontology.org/amigo/term/GO:0048018). Also removed relationships to ‘signal transduction' & 'receptor activator activity'
- Kimberly has checked usage of receptor agonist activity in curation corresponds to ligand as defined above and looking at documenting criteria for using this term.
- Review of 'receptor activator activity'
- Inconsistent use. ~20 experimental annotations https://docs.google.com/spreadsheets/d/15HcC6LFgOhA-BdQHvKMRjk3e-uIaGvitD5xH8Qzdkpk/edit#gid=233101787, different activities/processes have been annotated with this term. (make ticket)
- Review annotations of beta-catenin to DNA binding terms (make ticket)
- Tickets: for merging ‘frizzled-2 binding’ with ‘frizzled binding’ https://github.com/geneontology/go-ontology/issues/14182, and moving 'smoothened binding' from under 'frizzled binding' https://github.com/geneontology/go-ontology/issues/14182.
- collecting publications for documentation to illustrate term use and assays https://docs.google.com/document/d/1S6pjVaSpqwDHB3Q-2JBf35BrgOD-Z9z3w8WjijWvjw8/edit
- receptor ligand activity #14120 https://github.com/geneontology/go-ontology/issues/14120
- Ca2+ (Penelope away)
Cambridge GO Meeting
- Review Meeting Agenda
Minutes
- On call: