Annotation Conf. Call 2017-10-24: Difference between revisions

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= Agenda =
= Agenda =
== Annotation QC ==
== Annotation QC ==
* Manual annotation to uninformative high-level terms
* Manual annotation to uninformative high-level terms is strongly discouraged
** See: [https://github.com/geneontology/go-annotation/issues/1648 improving specificity by banning high level terms #1648]
** See: [https://github.com/geneontology/go-annotation/issues/1648 improving specificity by banning high level terms #1648]
** Direct annotation to 'transport' (GO:0006810) is one example where a more specific annotation can likely be made
** Direct annotation to 'transport' (GO:0006810) is one example where a more specific annotation can likely be made
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   (2) GR
   (2) GR
   (1) SynGO
   (1) SynGO
*Review action items from signaling workshop and GOC meeting
 
== Ontology Updates ==
* Molecular Function terms describing 'transcription factors' - Pascale
See: [https://github.com/geneontology/go-ontology/issues/13588 Make parent term for transcription factor activity]
 
*Review key action items from signaling workshop and GOC meeting


= Minutes =  
= Minutes =  

Revision as of 09:43, 23 October 2017

Meeting URL

Agenda

Annotation QC

  • Manual annotation to uninformative high-level terms is strongly discouraged
    • See: improving specificity by banning high level terms #1648
    • Direct annotation to 'transport' (GO:0006810) is one example where a more specific annotation can likely be made
    • In AmiGO, there are 53 experimentally supported annotations to 'transport'.
    • Can groups check these annotations to see if a more granular term is appropriate?
    • Annotations according to group:
 (8) EcoCyc
 (7) EcoliWiki
 (7) MGI
 (7) PseudoCAP
 (6) SGD
 (5) UniProt
 (4) BHF-UCL
 (3) RGD
 (3) TAIR
 (2) GR
 (1) SynGO

Ontology Updates

  • Molecular Function terms describing 'transcription factors' - Pascale

See: Make parent term for transcription factor activity

  • Review key action items from signaling workshop and GOC meeting

Minutes

  • On call: