Difference between revisions of "Annotation Conf. Call 2017-11-28"

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(Wnt signaling pathway)
(Wnt signaling pathway)
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**Annotation extensions to capture where receptor ligand activity occurs
 
**Annotation extensions to capture where receptor ligand activity occurs
 
***has_start_location, has_end_location
 
***has_start_location, has_end_location
 +
**More work may be done on the receptor ligand activity branch of the MF
 +
**We will also be examining the MF term 'signal transducer activity' to see if it is really needed
  
 
=== Ontology Development ===
 
=== Ontology Development ===

Revision as of 14:14, 26 November 2017

Meeting URL

Agenda

Infrastructure

users.yaml file

  • users.yaml file is used to store curator metadata and will also be used for proper annotation attribution (i.s. Assigned by) in the GPAD outputs from Noctua
  • ACTION: One curator from each curation site should review entries in users.yaml file to fill in information for:
    • groups
    • orcid (uri)
  • ACTION: Berkeley will be providing a one-time report that indicates where users have edit permission in Noctua but don't have an orcid or group associated with them

Annotation Review

Signaling Project

adenylate cyclase-activating G-protein coupled receptor signaling pathway

Wnt signaling pathway

  • beta-catenin annotations to review
    • DNA binding
    • Upgrade to canonical Wnt signaling
  • annotations to receptor ligand activity
    • Wild-type function vs disease state
    • Annotation extensions to capture where receptor ligand activity occurs
      • has_start_location, has_end_location
    • More work may be done on the receptor ligand activity branch of the MF
    • We will also be examining the MF term 'signal transducer activity' to see if it is really needed

Ontology Development

Minutes

  • On call: