Difference between revisions of "Annotation Conf. Call 2017-12-12"

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(HTP annotations)
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*Due this month
 
*Due this month
 
*http://wiki.geneontology.org/index.php/Grant_Progress_reports_2017
 
*http://wiki.geneontology.org/index.php/Grant_Progress_reports_2017
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 +
== Next Call ==
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*Tuesday, January 9th, 2018
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= Minutes =
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*On call:
 
      
 
      
  
 
[[Category:Annotation Working Group]]
 
[[Category:Annotation Working Group]]

Revision as of 06:07, 12 December 2017

Meeting URL

Agenda

Infrastructure

  • Report on missing orcids and groups in users.yaml file
  • users.yaml
  • groups.yaml
    • Some groups still need to be added, e.g. UniProt (GOA, Swiss-Prot)
  • Please keep in mind that the report is generated as part of the new build and a new attempt is made every night.
  • This means that:
    • 1) if the load fails the report may not be there (which is a good thing)
    • 2) there will times every day during regeneration when the report is not yet there

github review

  • go-annotation tracker is used for issues and project management related to the annotation working group
  • All curators who need to work on an issue should be listed in the Assignee field
    • Remove your name from the list when you've addressed or complete the work
  • Types of issues:
    • Annotation review
    • PAINT annotation/family review
    • Keyword mapping questions, e.g. InterPro2GO
    • Questions about annotation practice
    • Requests/proposals for annotation guidelines
  • Use of labels
    • Please always add a label to your issue
    • Trying to simplify the list of labels
    • Removed some that were overlapping, not applicable to this repo
    • Would like to move from using group labels to tracking submission via author
      • is:issue author:vanaukenk
  • Notifications
    • Not watching - will be notified when you are specifically mentioned (@yourname) or comment
    • Watching - will be notified of all activity

Annotation Review

Signaling Project

Canonical Wnt Signaling Pathway

HTP annotations

  • Continue to check and update evidence codes as needed.
  • New HTP paper google spreadsheet for potential HTP papers annotated using the GO:Sheet laballed:"Over_40_per_evidencecode"

https://docs.google.com/spreadsheets/d/11xExGJfj_39xPQUGkam3Xvtd6dtZ5DfANXhM2ZtDYB0/edit?ts=58d39700#gid=2144791301

  • https://github.com/geneontology/go-annotation/issues/1655
  • Generated by splitting out the experimental evidence codes and collating the papers with >40 lines of annotation per paper/per evidence code.
  • For most contributors, I have been able to do this directly from the GAF they submit to the GOC so that any DB-specific refs are included and any other sources that are incorporated into the anointed set.
  • For a few others, indicated on the sheet, had to download them from QuickGO.
  • Note: As they have been separated on evidence code, same paper may feature on separate lines.
  • Note: Only equivalent evidence codes to HTPs looked at (EXP, IDA, IEP, IGI, IMP).

Progress Reports

Next Call

  • Tuesday, January 9th, 2018

Minutes

  • On call: