Annotation Conf. Call 2018-01-09: Difference between revisions
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*[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms] | *[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms] | ||
*[https://github.com/geneontology/go-annotation/issues/1661 Protein complex representation in Noctua] | *[https://github.com/geneontology/go-annotation/issues/1661 Protein complex representation in Noctua] | ||
*[https://github.com/geneontology/go-ontology/issues/14375 Do we have to hard-code CC [complex terms] to MF and BP relationships in the ontology?] | |||
**Working group established, one meeting in late November | **Working group established, one meeting in late November | ||
**Next meeting? | **Next meeting? |
Revision as of 10:59, 8 January 2018
Meeting URL
Agenda
Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC
In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'
Annotation Review
HTP Annotations
- Review HTP annotations
- Forward genetic screens - needs clarification
- HTP-types will not be allowed as evidence for ISS+ISO
Signaling Workshop
Requests for Proposals
Protein Complexes Working Group
- Inferring MF annotations for complex members
- Proposal for guidelines for using contributes_to
- should we really use "colocalizes_with" with cc complex terms
- Protein complex representation in Noctua
- Do we have to hard-code CC [complex terms to MF and BP relationships in the ontology?]
- Working group established, one meeting in late November
- Next meeting?
Annotation Relations - Cellular Component
- should we really use "colocalizes_with" with cc complex terms
- Relations to describe gene product - component annotation
InterPro2GO Pipeline
- InterPro2GO pipeline
- Need to establish a working group here
Engaging External Experts
Requests for Guidelines
GO-CAM and Noctua
- QC for Noctua models
- New qualifiers for biological processes - including how to deal with legacy annotations
Minutes
- On call: