Annotation Conf. Call 2018-01-09: Difference between revisions
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====General Signaling Issues==== | ====General Signaling Issues==== | ||
*[https://github.com/geneontology/go-annotation/issues/1713 Review annotation to 'receptor ligand activity' (GO:0048018)] | *[https://github.com/geneontology/go-annotation/issues/1713 Review annotation to 'receptor ligand activity' (GO:0048018)] | ||
====Ca2+ Signaling - Fertilization==== | |||
====GPCR-mediated cAMP Signaling==== | ====GPCR-mediated cAMP Signaling==== | ||
*[https://github.com/geneontology/go-annotation/issues/1712 Review annotations to 'cAMP biosynthetic process'] | *[https://github.com/geneontology/go-annotation/issues/1712 Review annotations to 'cAMP biosynthetic process'] |
Revision as of 11:25, 8 January 2018
Meeting URL
Agenda
Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC
In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'
Annotation Review
HTP Annotations
- Review HTP annotations
- Forward genetic screens - needs clarification
- HTP-types will not be allowed as evidence for ISS+ISO
Signaling Workshop
In geneontology/go-annotation on github, there is a label 'GO workshop signaling 2017'
General Signaling Issues
Ca2+ Signaling - Fertilization
GPCR-mediated cAMP Signaling
JAK/STAT Signaling Pathway
Wnt Signaling Pathway
- PAINT:PTN000226268 Wnt signaling pathway to positive regulation of...
- Review annotations to beta catenin
- PANTHER:PTN000139394: remove wnt binding annotation to smoothened receptors
Requests for Proposals
Protein Complexes Working Group
- Inferring MF annotations for complex members
- Proposal for guidelines for using contributes_to
- should we really use "colocalizes_with" with cc complex terms
- Protein complex representation in Noctua
- Do we have to hard-code CC complex terms to MF and BP relationships in the ontology?
- Working group established, one meeting in late November
- Next meeting?
Annotation Relations - Cellular Component
- should we really use "colocalizes_with" with cc complex terms
- Relations to describe gene product - component annotation
InterPro2GO Pipeline
- InterPro2GO pipeline
- Need to establish a working group here
Engaging External Experts
Requests for Guidelines
GO-CAM and Noctua
- QC for Noctua models
- New qualifiers for biological processes - including how to deal with legacy annotations
Minutes
- On call: