Annotation Conf. Call 2018-01-09: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 5: Line 5:
==Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC==
==Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC==
In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'
In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'
==Requests for Proposals==
====Protein Complexes Working Group====
*[https://github.com/geneontology/go-annotation/issues/1662 Inferring MF annotations for complex members]
*[https://github.com/geneontology/go-annotation/issues/1650 Proposal for guidelines for using contributes_to]
*[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms]
*[https://github.com/geneontology/go-annotation/issues/1661 Protein complex representation in Noctua]
*[https://github.com/geneontology/go-ontology/issues/14375 Do we have to hard-code CC complex terms to MF and BP relationships in the ontology?]
**Working group established, one meeting in late November
**Next meeting?
====Annotation Relations - Cellular Component====
*[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms]
*[https://github.com/geneontology/go-annotation/issues/1639 Relations to describe gene product - component annotation]
*Draft proposal (Kimberly) - need input from Chris on RO
**Relations between gene products and organelles/locations
**Relations between gene products and macromolecular complexes
====InterPro2GO Pipeline====
*[https://github.com/geneontology/go-annotation/issues/1653 InterPro2GO pipeline]
**Need to establish a working group here
====Engaging External Experts====
*[https://github.com/geneontology/go-annotation/issues/1652 Recommendations and guidelines for next time we engage an external group of experts]
**Need to have a working group or responsible persons here, too
==Annotation Review==
==Annotation Review==
====HTP Annotations====
====HTP Annotations====
Line 38: Line 65:
*https://github.com/geneontology/go-ontology/issues/14275 NTR: “receptor ligand agonist activity” and “receptor ligand antagonist activity”]
*https://github.com/geneontology/go-ontology/issues/14275 NTR: “receptor ligand agonist activity” and “receptor ligand antagonist activity”]


==Requests for Proposals==
====Protein Complexes Working Group====
*[https://github.com/geneontology/go-annotation/issues/1662 Inferring MF annotations for complex members]
*[https://github.com/geneontology/go-annotation/issues/1650 Proposal for guidelines for using contributes_to]
*[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms]
*[https://github.com/geneontology/go-annotation/issues/1661 Protein complex representation in Noctua]
*[https://github.com/geneontology/go-ontology/issues/14375 Do we have to hard-code CC complex terms to MF and BP relationships in the ontology?]
**Working group established, one meeting in late November
**Next meeting?
====Annotation Relations - Cellular Component====
*[https://github.com/geneontology/go-annotation/issues/1500 should we really use "colocalizes_with" with cc complex terms]
*[https://github.com/geneontology/go-annotation/issues/1639 Relations to describe gene product - component annotation]
*Draft proposal (Kimberly) - need input from Chris on RO
**Relations between gene products and organelles/locations
**Relations between gene products and macromolecular complexes
====InterPro2GO Pipeline====
*[https://github.com/geneontology/go-annotation/issues/1653 InterPro2GO pipeline]
**Need to establish a working group here
====Engaging External Experts====
*[https://github.com/geneontology/go-annotation/issues/1652 Recommendations and guidelines for next time we engage an external group of experts]
**Need to have a working group or responsible persons here, too


==Requests for Guidelines==
==Requests for Guidelines==
====GO-CAM and Noctua====
====GO-CAM and Noctua====
*Wednesday calls ongoing
*[https://github.com/geneontology/go-annotation/issues/1651 QC for Noctua models]
*[https://github.com/geneontology/go-annotation/issues/1651 QC for Noctua models]
*[https://github.com/geneontology/go-annotation/issues/1517 New qualifiers for biological processes - including how to deal with legacy annotations]
*[https://github.com/geneontology/go-annotation/issues/1517 New qualifiers for biological processes - including how to deal with legacy annotations]

Revision as of 11:56, 8 January 2018

Meeting URL

Agenda

Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC

In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'

Requests for Proposals

Protein Complexes Working Group

Annotation Relations - Cellular Component

InterPro2GO Pipeline

Engaging External Experts

Annotation Review

HTP Annotations

Signaling Workshop

In geneontology/go-annotation on github, there is a label 'GO workshop signaling 2017'

General Signaling Issues

Ca2+ Signaling - Fertilization

GPCR-mediated cAMP Signaling

JAK/STAT Signaling Pathway

MAPK Cascade

Canonical Wnt Signaling Pathway


Requests for Guidelines

GO-CAM and Noctua

Minutes

  • On call: