Annotation Conf. Call 2018-01-09: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
 
(16 intermediate revisions by 3 users not shown)
Line 16: Line 16:
**Working group established, one meeting in late November
**Working group established, one meeting in late November
**Next meeting?
**Next meeting?
*Updates from Birgit:
**Latest: I have to design a user survey to answer some of the open questions from our call. It's on my to-do list for this month.
**Other discussion points rely on us finishing the complex IDs. Our developers were rather stretched this autumn so it's taking a little longer than expected but they are back on it and it's really close!


====Annotation Relations - Cellular Component====
====Annotation Relations - Cellular Component====
Line 23: Line 26:
**Relations between gene products and organelles/locations
**Relations between gene products and organelles/locations
**Relations between gene products and macromolecular complexes
**Relations between gene products and macromolecular complexes
====Annotation Relations - Biological Process====
*[https://github.com/geneontology/go-annotation/issues/1517 New qualifiers for biological processes - including how to deal with legacy annotations]


====Cellular Component Annotations for Transmembrane Proteins====
====Cellular Component Annotations for Transmembrane Proteins====
Line 41: Line 47:
***Forward genetic screens - may need further clarification and examples of what is/is not high throughput
***Forward genetic screens - may need further clarification and examples of what is/is not high throughput
*[https://github.com/geneontology/go-annotation/issues/1654 HTP-types will not be allowed as evidence for ISS+ISO]
*[https://github.com/geneontology/go-annotation/issues/1654 HTP-types will not be allowed as evidence for ISS+ISO]
**Set date for meeting to discuss ISS/ISO transfer from HTP to be discussed in Feb.


====Signaling Workshop====
====Signaling Workshop====
Line 68: Line 75:
*https://github.com/geneontology/go-ontology/issues/14275 NTR: “receptor ligand agonist activity” and “receptor ligand antagonist activity”]
*https://github.com/geneontology/go-ontology/issues/14275 NTR: “receptor ligand agonist activity” and “receptor ligand antagonist activity”]


==Requests for Guidelines==
==GO-CAM and Noctua==
====GO-CAM and Noctua====
*No call tomorrow
*Wednesday calls ongoing
*Software team has been working on the priority issues for Noctua 1.0 release
*[https://github.com/geneontology/go-annotation/issues/1651 QC for Noctua models]
*[https://github.com/geneontology/go-annotation/issues/1651 QC for Noctua models]
*[https://github.com/geneontology/go-annotation/issues/1517 New qualifiers for biological processes - including how to deal with legacy annotations]
 
==Protein2GO Reports==
*Protein2GO users please remember to check the monthly reports and work on updating/fixing flagged annotations
 
==Two Working Meetings==
*January 22nd - 26th: Docathon at Berkeley
*February 12 - 16th: Ontology GitHub jamboree in Denver


= Minutes =
= Minutes =
*On call:
*On call: David H, Eric, George, Giulia, Harold, Helen, Karen, Kimberly, Li, Liz, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Sandra, Stacia, Stan, Suzi, Tanya, Tom, Val





Latest revision as of 14:11, 9 January 2018

Meeting URL

Agenda

Review of Cambridge meeting action items and milestones for 2018-05 GOC meeting in NYC

In geneontology/go-annotation on github, there is a Milestone '2018-05 GOC meeting'

Requests for Proposals

Protein Complexes Working Group

Annotation Relations - Cellular Component

Annotation Relations - Biological Process

Cellular Component Annotations for Transmembrane Proteins

https://github.com/geneontology/go-annotation/issues/1621

InterPro2GO Pipeline

Engaging External Experts

Annotation Review

HTP Annotations

Signaling Workshop

In geneontology/go-annotation on github, there is a label 'GO workshop signaling 2017'

General Signaling Issues

Ca2+ Signaling - Fertilization

GPCR-mediated cAMP Signaling

JAK/STAT Signaling Pathway

MAPK Cascade

Canonical Wnt Signaling Pathway

GO-CAM and Noctua

  • No call tomorrow
  • Software team has been working on the priority issues for Noctua 1.0 release
  • QC for Noctua models

Protein2GO Reports

  • Protein2GO users please remember to check the monthly reports and work on updating/fixing flagged annotations

Two Working Meetings

  • January 22nd - 26th: Docathon at Berkeley
  • February 12 - 16th: Ontology GitHub jamboree in Denver

Minutes

  • On call: David H, Eric, George, Giulia, Harold, Helen, Karen, Kimberly, Li, Liz, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Sandra, Stacia, Stan, Suzi, Tanya, Tom, Val