Annotation Conf. Call 2018-02-13: Difference between revisions

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=== HTP Working Group ===
=== HTP Working Group ===
*[https://docs.google.com/document/d/1Gd6cRQh67QZQ2_T7kQjqYMpkfJ_Wqm0baVpyMdFPRHs/edit HTP Meetings Agenda/Minutes]
*[https://docs.google.com/document/d/1Gd6cRQh67QZQ2_T7kQjqYMpkfJ_Wqm0baVpyMdFPRHs/edit HTP Meetings Agenda/Minutes]
*Guideline updates
*Guideline updates:
**[https://github.com/geneontology/go-annotation/issues/1775 Transfer of HTP annotations via sequence-based transfer methods]
**[https://github.com/geneontology/go-annotation/issues/1775 Transfer of HTP annotations via sequence-based transfer methods]
*Proteomics experiments
**[https://github.com/geneontology/go-annotation/issues/1774 HTP evidence codes and genetic analyses]
**[https://github.com/geneontology/go-annotation/issues/1773 Annotations from proteomics experiments]
***[https://github.com/geneontology/go-annotation/issues/1773 Clarify guidelines wrt cellular comprtment purifications & stats]
***[https://github.com/geneontology/go-annotation/issues/1801 Review of RCA Evidence Code Usage]


=== Protein Complexes ===
=== Protein Complexes ===
*Draft survey to GO users
*[https://docs.google.com/document/d/1P_VLM9g13kj9lu3CRAgotAI3cUmWkS1yWaVg95u2Vbk/edit Draft survey to GO users]
*Follow-up call to discuss
*[https://doodle.com/poll/s4xnewsz6y38get7 Follow-up call to discuss - Doodle poll]


== Annotation File Pipelines ==
== Annotation File Pipelines ==
*UniProtKB = namespace; UniProt = contributor
*[https://github.com/geneontology/go-annotation/issues/1772 UniProtKB = entity namespace; UniProt = contributor]
 
== Annotation Review ==
== Annotation Review ==
*There are currently 68 tickets in the GitHub geneontology/go-annotation tracker with the 'annotation review' label
*Corresponding Google spreadsheets exist for many of these, but not all yet


= Minutes =  
= Minutes =  
*On call:   
*On call:  Birgit, Chris, David H., Harold, Edith, Eric, George, Helen, Karen, Kimberly, Midori, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Shur-Jen, Stacia, Stan, Suzi, Tanya, Terry, Val
 
== Protein Complexes ==
*Survey comments:
**What might help is to give the survey taker some labeled examples of actual annotations as they are and proposed alternatives (Tanya).
*Use cases:
**[https://docs.google.com/document/d/1ZtAcjIyIQ_ycbuMHyvLA-KIJQtGenh82lxS-MKC6a_A/edit Use cases document - please contribute!]




[[Category:Annotation Working Group]]
[[Category:Annotation Working Group]]

Latest revision as of 16:32, 22 February 2018

Agenda

GitHub Projects Page

Working Group Reports

GO Managers

  • Documentation meeting in Berkeley, January 22nd - 28th
  • Worked on web site and wiki
  • Overall goals:
    • Focus GOC website on 'external-facing' documentation for consumers of GO data
    • Move 'internal-facing' documentation to GOC wiki for areas such as annotation guidelines
      • Will link to wiki from website as appropriate for 'internal-facing' documentation
    • 'Unpublish' out-of-date pages on the website
    • 'Archive' out-of-date pages on the wiki
    • Still some work to do, but we made good progress

GO Ontology Editors

  • Working meeting in Denver, February 12th - 16th
  • Overall goals:
    • Review and close as many outstanding tickets as possible
    • Triage tickets for future projects
    • Discussion of more difficult tickets
    • May need feedback from submitters

HTP Working Group

Protein Complexes

Annotation File Pipelines

Annotation Review

  • There are currently 68 tickets in the GitHub geneontology/go-annotation tracker with the 'annotation review' label
  • Corresponding Google spreadsheets exist for many of these, but not all yet

Minutes

  • On call: Birgit, Chris, David H., Harold, Edith, Eric, George, Helen, Karen, Kimberly, Midori, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Shur-Jen, Stacia, Stan, Suzi, Tanya, Terry, Val

Protein Complexes

  • Survey comments:
    • What might help is to give the survey taker some labeled examples of actual annotations as they are and proposed alternatives (Tanya).
  • Use cases: