Annotation Conf. Call 2018-02-13: Difference between revisions
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**[https://github.com/geneontology/go-annotation/issues/1774 HTP evidence codes and genetic analyses] | **[https://github.com/geneontology/go-annotation/issues/1774 HTP evidence codes and genetic analyses] | ||
**[https://github.com/geneontology/go-annotation/issues/1773 Annotations from proteomics experiments] | **[https://github.com/geneontology/go-annotation/issues/1773 Annotations from proteomics experiments] | ||
***[https://github.com/geneontology/go-annotation/issues/ | ***[https://github.com/geneontology/go-annotation/issues/1773 Clarify guidelines wrt cellular comprtment purifications & stats] | ||
***[https://github.com/geneontology/go-annotation/issues/1801 Review of RCA Evidence Code Usage] | ***[https://github.com/geneontology/go-annotation/issues/1801 Review of RCA Evidence Code Usage] | ||
=== Protein Complexes === | === Protein Complexes === | ||
*[https://docs.google.com/document/d/1P_VLM9g13kj9lu3CRAgotAI3cUmWkS1yWaVg95u2Vbk/edit Draft survey to GO users] | *[https://docs.google.com/document/d/1P_VLM9g13kj9lu3CRAgotAI3cUmWkS1yWaVg95u2Vbk/edit Draft survey to GO users] | ||
*Follow-up call to discuss | *[https://doodle.com/poll/s4xnewsz6y38get7 Follow-up call to discuss - Doodle poll] | ||
== Annotation File Pipelines == | == Annotation File Pipelines == | ||
*[https://github.com/geneontology/go-annotation/issues/1772 UniProtKB = namespace; UniProt = contributor] | *[https://github.com/geneontology/go-annotation/issues/1772 UniProtKB = entity namespace; UniProt = contributor] | ||
== Annotation Review == | == Annotation Review == | ||
Line 43: | Line 43: | ||
= Minutes = | = Minutes = | ||
*On call: | *On call: Birgit, Chris, David H., Harold, Edith, Eric, George, Helen, Karen, Kimberly, Midori, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Shur-Jen, Stacia, Stan, Suzi, Tanya, Terry, Val | ||
== Protein Complexes == | |||
*Survey comments: | |||
**What might help is to give the survey taker some labeled examples of actual annotations as they are and proposed alternatives (Tanya). | |||
*Use cases: | |||
**[https://docs.google.com/document/d/1ZtAcjIyIQ_ycbuMHyvLA-KIJQtGenh82lxS-MKC6a_A/edit Use cases document - please contribute!] | |||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Latest revision as of 16:32, 22 February 2018
Agenda
GitHub Projects Page
Working Group Reports
GO Managers
- Documentation meeting in Berkeley, January 22nd - 28th
- Worked on web site and wiki
- Overall goals:
- Focus GOC website on 'external-facing' documentation for consumers of GO data
- Move 'internal-facing' documentation to GOC wiki for areas such as annotation guidelines
- Will link to wiki from website as appropriate for 'internal-facing' documentation
- 'Unpublish' out-of-date pages on the website
- 'Archive' out-of-date pages on the wiki
- Still some work to do, but we made good progress
GO Ontology Editors
- Working meeting in Denver, February 12th - 16th
- Overall goals:
- Review and close as many outstanding tickets as possible
- Triage tickets for future projects
- Discussion of more difficult tickets
- May need feedback from submitters
HTP Working Group
- HTP Meetings Agenda/Minutes
- Guideline updates:
Protein Complexes
Annotation File Pipelines
Annotation Review
- There are currently 68 tickets in the GitHub geneontology/go-annotation tracker with the 'annotation review' label
- Corresponding Google spreadsheets exist for many of these, but not all yet
Minutes
- On call: Birgit, Chris, David H., Harold, Edith, Eric, George, Helen, Karen, Kimberly, Midori, Pascale, Paul T., Petra, Rachael, Rob, Sabrina, Sage, Shur-Jen, Stacia, Stan, Suzi, Tanya, Terry, Val
Protein Complexes
- Survey comments:
- What might help is to give the survey taker some labeled examples of actual annotations as they are and proposed alternatives (Tanya).
- Use cases: