Annotation Conf. Call 2018-03-13: Difference between revisions

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*Once review is done, please remove yourself from the assignee list AND record the action in the accompanying Google spreadsheet linked from the github ticket
*Once review is done, please remove yourself from the assignee list AND record the action in the accompanying Google spreadsheet linked from the github ticket
*[https://drive.google.com/drive/folders/1FDfp4yXlLZjrcB0NIbsAgUukDWDwhJe_ Spreadsheet on GO Annotation Google drive with specific annotations, suggestions]
*[https://drive.google.com/drive/folders/1FDfp4yXlLZjrcB0NIbsAgUukDWDwhJe_ Spreadsheet on GO Annotation Google drive with specific annotations, suggestions]
** Need a re-review of palate development annotations.
*Tickets to review:
*Tickets for discussion:
**[https://github.com/geneontology/go-annotation/issues/1298 HAMAP:MF_03064 mapping for Q9P6N6]
***General issue here: when should we capture a causal relation? 
**[https://github.com/geneontology/go-annotation/issues/1746 Review annotations to palate development]
**[https://github.com/geneontology/go-annotation/issues/1746 Review annotations to palate development]
*Some older tickets that still need to be addressed:
***14 annotations left (BHF-UCL)
**[https://github.com/geneontology/go-annotation/issues/1293 Review annotations to mRNA cleavage]
**[https://github.com/geneontology/go-annotation/issues/1293 Review annotations to mRNA cleavage]
***1 annotation left (SWIP)


== Annotation Requests ==
== Annotation Requests ==

Revision as of 08:53, 13 March 2018

Agenda

GOC Meeting, NYU, New York, NY, May 12-14th

  • Reminder to register, and reserve your hotel room before April 6th if staying at the Shelburne NYC
  • Logistics
  • Agenda

20th Anniversary GO Meeting, Montreal, CA

  • Dates set for Oct 17-20

HTP Annotation Guidelines

  • Helen has added documentation on the use of HTP evidence codes to the wiki:
    • Guide to GO Evidence Codes
    • Annotation standards for HTP proteomics experiments
      • How best to capture the combination of a published paper's experiment combined with secondary curator evaluation using some other methodology? New combinatorial evidence code and paper plus a GO reference? (This would be a change to our reference practice.)
    • Review RCA evidence code - Please can the groups listed below review their RCA annotations and decide if they'd still like to keep them and if RCA is still the appropriate evidence code?
      • TAIR
      • MGI
      • SGD
      • RGD
      • CAFA

Annotation Review

  • Annotation review is being driven by annotation QC and ontology development
  • Goal here is for correct and consistent annotation
    • Prioritize by:
      • Annotations that are incorrect
      • Annotations to terms that are being made obsolete or updated in the ontology
      • Annotations to high level terms that are not informative
      • Annotations to grouping terms for which more granular, informative terms exist (maybe weren't found initially or were created after the annotation was made)
  • Tickets are created in the geneontology/go-annotation repo on github
  • Currently, 59 open tickets labeled with Annotation Review in geneontology/go-annotation
  • Tickets are assigned to representatives of the annotation groups that need to perform the review
  • Once review is done, please remove yourself from the assignee list AND record the action in the accompanying Google spreadsheet linked from the github ticket
  • Spreadsheet on GO Annotation Google drive with specific annotations, suggestions
  • Tickets to review:

Annotation Requests

Minutes

  • On call: