View source for Annotation Conf. Call 2018-03-27

= Agenda = 
== GOC Meeting, NYU, New York, NY, May 12-14th ==
*Reminder to register, and reserve your hotel room before April 6th if staying at the Shelburne NYC
*[http://wiki.geneontology.org/index.php/2018_NYU_GOC_Meeting_Logistics Logistics]
*[http://wiki.geneontology.org/index.php/2018_NYU_GOC_Meeting_Agenda Agenda]

== 20th Anniversary GO Meeting, Montreal, CA ==
*Dates set for Oct 17-20

== Updates on Projects ==
*[https://github.com/geneontology/go-annotation/issues/1592  MAPK cascade- Signaling Project]
*[https://github.com/geneontology/go-ontology/projects/9 Extracellular matrix revisions]

== Evidence Codes ==
=== RCA ===
*[https://github.com/geneontology/go-annotation/issues/1801 Review RCA evidence code] - Please can the groups listed below review their RCA annotations and decide if they'd still like to keep them and if RCA is still the appropriate evidence code?
**Thank you to everyone who has reviewed their existing RCA annotations.
**Many RCA annotations were removed, but some groups are keeping annotations from papers that use methodology consistent with the definition of RCA.
**Since these annotations come from papers, the originally proposed one-year restriction does not make sense and will not be an annotation rule.
***Please send Kimberly PMIDs for papers that were kept for use as examples in our evidence code documentation.
**That said, periodic annotation review is always a good idea.
**Remaining groups will be contacted individually.

== Annotating High Throughput Experiments ==
*[https://github.com/geneontology/go-annotation/issues/1796 Proposal for curating extracellular matrix proteins from proteomics experiments]
*[https://github.com/geneontology/go-annotation/issues/1885 Review reference guidelines for GAF, GPAD]

== Annotation Survey ==
*We are putting together a survey on annotation practices across the GOC
*Should be ready very soon
*Would like results before the GOC meeting in NY

== GO-CAM/Noctua ==
*Next call tomorrow, Wednesday, March 28th at 11:00am EDT (see Google calendar)

== Protein Complexes Working Group ==
*Next call on Monday, April 23rd at 1:10pm EDT (see Google calendar)

= Minutes = 
*On call: Chris, David H., Dustin, Edith, Giulia, Harold, Helen, Jim, Judy, Karen, Kevin, Kimberly, Li, Midori, Pascale, Paul T, Penelope, Petra, Rachael, Rob, Sabrina, Sage, Stacia, Stan, Suzi A., Suzi L. 

== GOC Meeting, NYU, New York, NY, May 12-14th ==
*Register and reserve your hotel room before April 6th if staying at the Shelburne NYC
*If you have any issues with reserving a room, please contact Peter D'Eustachio right away

== Updates on Projects ==
=== MAPK Signaling ===
*Some ontology updates to how MAPK signaling pathways are named in GO
*Upcoming: annotation review for potentially re-housing annotations according to the new MAPK pathway terms
*Some existing annotations to upstream genes may need to be re-housed




[[Category:Annotation Working Group]]