Annotation Conf. Call 2018-04-10
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Agenda
GOC Meeting, NYU, New York, NY, May 12-14th
- Reminder to register, and reserve your hotel room before April 6th if staying at the Shelburne NYC
- Logistics
- Agenda
20th Anniversary GO Meeting, Montreal, Canada
- Dates set for Oct 17-19
Annotation Survey
- We are conducting a survey on annotation practices across the GOC
- This will allow us to have a better overall view of different group's workflows, pipelines
- Only need one response per annotation group
- Would like results before the GOC meeting in NY
- Please could each group respond by May 1st
Updates on Projects
MAPK Cascade
Extracellular Matrix
Canonical Wnt Signaling Pathway
- Working on compiling annotations to review
- Main issues:
- Distinguishing gene products that are involved in canonical Wnt signaling vs +/- regulation of canonical Wnt signaling
- Annotating to more granular child of Wnt signaling pathway when appropriate
- Annotation of downstream targets to the canonical Wnt signaling pathway
Ontology Development and Annotation Review
Transcription factor refactoring
- Remove the 'transcription factor activity, protein binding' branch
- https://github.com/geneontology/go-ontology/issues/15535
- Obsoletion notice: Some children of GO:0000988 transcription factor activity, protein binding’
- https://github.com/geneontology/go-ontology/issues/15538
Annotation Review requests
- GO:0000989 'transcription factor activity, transcription factor binding'
- GO:0001076 'transcription factor activity, RNA polymerase II transcription factor binding'
- There will be more annotations reviews to come in the upcoming days/weeks. For most the work load is expected to be small, a few proteins per group at the most.
- Please let Pascale know if you are trying to annotate a function and cannot find the term - this will help decide whether some terms are missing or if we need to improve some term labels/definitions.
GO-CAM/Noctua
- Next call tomorrow, Wednesday, April 11th at 11:00am EDT (see Google calendar)
Protein Complexes Working Group
- Next call on Monday, April 23rd at 1:10pm EDT (see Google calendar)
Minutes
- On call: Chris, David H., Dustin, Harold, Helen, Karen, Kimberly, Li, Midori, Pascale, Paul T., Penelope, Petra, Sabrina, Sage, Stan, Suzi A., Tanya, Tom, Val