Annotation Conf. Call 2018-05-22
Meeting URL
Agenda
Annotation Review
Cyclic nucleotide metabolic process and child terms (from GPCR signaling work)
New Today
- Review annotations to GO:0030814 regulation of cAMP metabolic process
- Review annotations to 'regulation of cGMP metabolic/catabolic/biosynthetic process', and + and - children
- Review annotations to GO:0052653 3',5'-cyclic diguanylic acid metabolic process
- Review annotations to GO:0030803 negative regulation of cyclic nucleotide biosynthetic process
- Review annotations to GO:0030802 regulation of cyclic nucleotide biosynthetic process
Existing
- Review annotations to GO:0009190 cyclic nucleotide biosynthetic process
- Review annotations to GO:0009187 cyclic nucleotide metabolic process
- Review annotations to GO:0006182 cGMP biosynthetic process
- Review annotations to cAMP catabolic process
- Review annotations to GO:0030820 regulation of cAMP catabolic process and children
Growth
Canonical Wnt Signaling
- Review annotations wrt GO:0090090 'negative regulation of canonical Wnt signaling pathway'
- Refer to first tab in sheet titled, ALL-CHECK
- Review annotations wrt GO:0060070 'canonical Wnt signaling pathway'
- Refer to first tab in sheet title, ALL-CHECK
MAPK Cascade
Extracellular Matrix
GOC Meeting - NYC
Minutes
- Agenda and Minutes
- GO managers will review action items and prioritize for the coming months
Presentations/Slides
- Presentations and slides are available in the GO's Google drive
- If you presented and your slides are not here, please add them.
SAB
- SAB followed the GOC meeting
- Report to come soon
Annotation Survey Results
- We have conducted a survey on annotation practices across the GOC
- Thank you to everyone who responded
- Presentation on survey results
GO-CAM/Noctua
- Next call tomorrow, Wednesday, May 23rd at 11:00am EDT (see Google calendar)
Minutes
- On call: Barbara, Giulia, Harold, Karen, Kimberly, Li, Liz, Pascale, Petra, Sabrina, Shur-Jen, Suzi L, Tanya
Annotation Review
- We should include ISS annotations in our annotation review pipeline.
- Protein2GO checks that the gene product referenced in the With/From for an ISS annotation still has a valid annotation.
- We still have older ISS annotations with nothing in the With/From column; these should be reviewed and removed, or updated, as appropriate.