Annotation Conf. Call 2018-10-09

From GO Wiki
Jump to navigation Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

Meeting URL

GO Conference Calls

  • Tuesdays at 8am PDT
    • 1st Tuesday: Alliance Biological Function
    • 2nd Tuesday: GO Consortium
    • 3rd Tuesday: Alliance Biological Function/GO-CAM Working Group
    • 4th Tuesday: GO-CAM Working Group
    • 5th Tuesday: ad hoc, as needed
  • One Zoom URL for all - https://stanford.zoom.us/j/976175422

Agenda

Molecular Function Refactor

Distal/Proximal Promoter Binding Terms

  • Proposal: use parent term and capture binding as contextual information using SO terms

Pipeline

http://wiki.geneontology.org/index.php/Release_Pipeline

Annotation QC/QC Reports

Reminder - Update datasets.yaml file

Annotation File Formats

GPAD/GPI for Internal Consortium Annotation Exchange

  • At NYC meeting in May, proposal was made that we would eventually switch to using GPAD/GPI file format for data exchange within the consortium
  • Reasons to switch to GPAD/GPI:
    • Less redundacy
    • Ability to use expanded set of annotation relations (gp2term)
    • Ability to use unique ECO identifiers instead of 3-letter GO codes
    • Annotation properties field - allows for capturing annotation metadata
  • Many groups consume GPAD (any external group using Protein2GO; groups consuming derived GPAD from GO-CAM models)
  • Not all groups produce a GPAD
  • Any barriers to moving to GPAD/GPI?
  • Timeline - by start of new year (2019)?

Montreal Meeting, October Wednesday, 17th - Friday, 19th

Minutes

  • On call: David, Dustin, Edith, Giulia, Harold, Helen, Karen, Kimberly, Li, Liz, Marie-Claire, Midori, Pascale, Penelope, Petra, Rachael, Rob, Ruth, Sabrina, Seth, Shur-Jen, Suzi

Ruth