Annotation Conf. Call 2018-12-18

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Meeting URL

GO Conference Calls

  • Tuesdays at 8am PDT
    • 1st Tuesday: Alliance Biological Function
    • 2nd Tuesday: GO Consortium
    • 3rd Tuesday: GO-CAM Working Group
    • 4th Tuesday: GO-CAM Working Group
    • 5th Tuesday: Alliance Biological Function
  • One Zoom URL for all - https://stanford.zoom.us/j/976175422

Agenda

Progress Reports

  • Thank you to everyone who submitted or worked on a progress report.
  • Any questions or outstanding issues?

Annotation Review Stats

HTP Publication

  • Congratulations and thanks to Helen and the HTP working group on the acceptance (with minor revisions) of the Database manuscript on annotating GO from HTP experiments.

Ontology Editor's Geneva Meeting

  • The ontology editor's met in Geneva last week to discuss plans to align reactions amongst GO - Rhea - Reactome.
  • The plan is that, going forward, Rhea reactions will be the authoritative source for GO catalytic activity terms.
  • We also reviewed and discussed conversion of Reactome pathways to GO-CAM models (Ben Good's work).
    • Proposal for new RO relations to describe participants in reactions and metabolic processes.
      • This proposal will address the incorrect inferences that are currently generated from GO-CAM due to insufficient equivalence axioms in the ontology.
    • Touched on representation of protein complexes in GO-CAM.
    • Working on a report of genes annotated to a process and regulation of that process (broadly speaking) for future curation review.

Pipeline - PAINT annotations

  • Retrieving PAINT annotations for MODs
  • PAINT annotations that have gone through QA/QC pipeline can be retrieved from MOD-specific production annotation files on snapshot or current

Annotation Guidelines

2019

  • Next consortium-wide call: Tuesday, January 8th, 2019

Minutes

  • On call: Chris G., Chris, M., Suzi L., David, Giulia, Kevin, Kimberly, Laurent-Philippe, Li, Michele, Midori, Pascale, Patrick, Paul T., Sabrina, Seth, Shur-Jen, Stan, Tanya