Annotation Conf. Call 2019-05-14

Agenda

GOC meeting debrief/announcements

Communication

• Remind people about Gitter as an option to communicate with other curators

Transcription Factor Annotations

• TF annotations: All: People will need to migrate transcription factor annotations to specific TF binding terms to use GO+SO extensions

Only 2 terms found in SO so far:

EXP annotations - GO term - SO term 114 GO:0070888 E-box binding SO:0001158 E_box_motif 12 GO:0035497 cAMP response element binding SO:0001843 CRE 10 GO:0034056 estrogen response element binding 3 GO:0035538 carbohydrate response element binding 2 GO:0070594 juvenile hormone response element binding 3 GO:0071820 N-box binding 8 GO:0044323 retinoic acid-responsive element binding 5 GO:0010736 serum response element binding 4 GO:0032810 sterol response element binding 5 GO:0070644 vitamin D response element binding

PAINT

• Remind people they can provide guidance for PAINT annotation: PAINT Annotations: to prevent over-propagation to paralogs: submit GitHub tickets explaining that the list of gene products associated with this process is complete and that paralogs should not be associated with the term.

Annotation Pipelines

• Annotation pipelines and guidelines: We'd like to have information about each group's annotation guidelines and how annotations are processes and presented/exporter to users.

MOD Import into Noctua

• MGI and WB are working on a pipeline to import all of their manual annotations into Noctua

Minutes

• Present: