Annotation Conf. Call 2019-05-14: Difference between revisions
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| Line 19: | Line 19: | ||
! SO term | ! SO term | ||
|- | |- | ||
| 114 | GO:0070888 E-box binding | SO:0001158 E_box_motif | | 114 | ||
| GO:0070888 E-box binding | |||
| SO:0001158 E_box_motif | |||
|- | |- | ||
| 12 | GO:0035497 cAMP response element binding | SO:0001843 CRE | | 12 | ||
| GO:0035497 cAMP response element binding | |||
| SO:0001843 CRE | |||
|- | |- | ||
| 10 | GO:0034056 estrogen response element binding | | | 10 | ||
| GO:0034056 estrogen response element binding | |||
| | |||
|- | |- | ||
| 3 | GO:0035538 carbohydrate response element binding | | | 3 | ||
| GO:0035538 carbohydrate response element binding | |||
| | |||
|- | |- | ||
| 2 | GO:0070594 juvenile hormone response element binding | | | 2 | ||
| GO:0070594 juvenile hormone response element binding | |||
| | |||
|- | |- | ||
| 3 | GO:0071820 N-box binding | | | 3 | ||
| GO:0071820 N-box binding | |||
| | |||
|- | |- | ||
| 8 | GO:0044323 retinoic acid-responsive element binding | | | 8 | ||
| GO:0044323 retinoic acid-responsive element binding | |||
| | |||
|- | |- | ||
| 5 | GO:0010736 serum response element binding | | | 5 | ||
| GO:0010736 serum response element binding | |||
| | |||
|- | |- | ||
| 4 | GO:0032810 sterol response element binding | | | 4 | ||
| GO:0032810 sterol response element binding | |||
| | |||
|- | |- | ||
| 5 | GO:0070644 vitamin D response element binding| | | 5 | ||
| GO:0070644 vitamin D response element binding | |||
| | |||
|} | |} | ||
Revision as of 02:12, 14 May 2019
Agenda
GOC meeting debrief/announcements
Communication
- Remind people about Gitter as an option to communicate with other curators
Transcription Factor Annotations
- TF annotations: All: People will need to migrate transcription factor annotations to specific TF binding terms to use GO+SO extensions
Only 2 terms found in SO so far:
| EXP annotations | GO term | SO term |
|---|---|---|
| 114 | GO:0070888 E-box binding | SO:0001158 E_box_motif |
| 12 | GO:0035497 cAMP response element binding | SO:0001843 CRE |
| 10 | GO:0034056 estrogen response element binding | |
| 3 | GO:0035538 carbohydrate response element binding | |
| 2 | GO:0070594 juvenile hormone response element binding | |
| 3 | GO:0071820 N-box binding | |
| 8 | GO:0044323 retinoic acid-responsive element binding | |
| 5 | GO:0010736 serum response element binding | |
| 4 | GO:0032810 sterol response element binding | |
| 5 | GO:0070644 vitamin D response element binding |
PAINT
- Remind people they can provide guidance for PAINT annotation: PAINT Annotations: to prevent over-propagation to paralogs: submit GitHub tickets explaining that the list of gene products associated with this process is complete and that paralogs should not be associated with the term.
Annotation Pipelines
- Annotation pipelines and guidelines: We'd like to have information about each group's annotation guidelines and how annotations are processes and presented/exporter to users.
MOD Import into Noctua
- MGI and WB are working on a pipeline to import all of their manual annotations into Noctua
Minutes
- Present: