Revision as of 10:02, 9 July 2019

Agenda

Tagging InterPro in issues
Lorna has requested that we tag InterPro curators so they can be alerted to issues relevant to them (can find relevant gitHub handles on the group-contacts.yaml file: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv)
Please also add the InterPro mapping label (always good practice to add labels)

Follow up to 2019-06-11 annotation conference call to review recommendations and actions
Proposal and Recommendations
Biological Process Annotations
- Protein Complex Oligomerization
- Regulation of Protein Complex Oligomerization
Molecular Function Annotations
- Protein Dimerization Activity (includes regulation of activity)
- Annotations to some terms, e.g. protein homodimerization activity, should be handled by merge (in this case into 'identical protein binding')
- For IC, NAS, and TAS evidence codes, recommend upgrading to an experimentally supported annotation (as per guidelines, e.g. identical protein binding with IPI) or removing
- For IDA annotations, we'd like to convert as many of those as possible into IPI, even if the With field will contain the same ID as the annotated entity. This allows for consistent representation of binding annotations in GO.
Gitter question from Petra

After USC hackathon in June, we formed a small working group to fully articulate the GO-CAM model specifications
This will allow uniform QC across workbenches, projects (e.g. Reactome and MOD imports)
Will also allow us to move forward with harmonizing AE relations used in GO-CAM and conventional annotation

@@ Line 8: / Line 8: @@
 == Protein oligomerization terms in GO ==
 * Follow up to 2019-06-11 annotation conference call to review recommendations and actions
+* [https://docs.google.com/document/d/1JxzNwl1fr5Fj-IJy_Fo1lLfAlAQB8IxPDwwYKxIXBZo Proposal and Recommendations]
 * Biological Process Annotations
 ** [https://docs.google.com/spreadsheets/d/15tIvSts5PcWidtMpXTQQfjFY3LTYcfjOc62Y5_FeRpU Protein Complex Oligomerization]