Difference between revisions of "Annotation Conf. Call 2019-08-13"

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** On today's call, we will review the annotation extension relations currently used with MF terms and the proposed updates to their use in order to align conventional annotation and GO-CAM models
 
** On today's call, we will review the annotation extension relations currently used with MF terms and the proposed updates to their use in order to align conventional annotation and GO-CAM models
 
** [https://docs.google.com/spreadsheets/d/1zB8UKtG3JRGMkHgXmMpby-K5RFmYxGGRMEXULCCtcPo/edit#gid=1539887761 Google summary spreadsheet of MF extensions]
 
** [https://docs.google.com/spreadsheets/d/1zB8UKtG3JRGMkHgXmMpby-K5RFmYxGGRMEXULCCtcPo/edit#gid=1539887761 Google summary spreadsheet of MF extensions]
 +
*** MF annotation extensions to review:
 +
**** part_of (GO:CC, CL, UBERON)
 +
**** has_input (not highest priority, but groups can review existing has_input to see if NOT direct; refer to previous [https://github.com/geneontology/go-annotation/issues/2076 github ticket] for now)
 +
**** occurs_at (occurs_in OR has_input - discuss useful granularity of SO terms for GO annotation)
 +
**** happens_during (GO:BP (that is not a biological phase))
 +
**** activated_by and inhibited_by (TBD)
 +
**** long tail.....
 +
*** gorel relations to obsolete:
 +
**** not_happens_during
 +
**** in_presence_of
  
 
= Minutes =
 
= Minutes =
*Present:  
+
*Present: Chris, David, Dmitry, Edith, Giulia, Harold, Kimberly, Laurent-Philippe, Midori, Pascale, Patrick, Rob, Sabrina, Seth, Shur-Jen, Stacia, Suzi, Tanya
  
  
  
 
[[Category:Annotation Working Group]]
 
[[Category:Annotation Working Group]]

Revision as of 08:03, 13 August 2019

Agenda

October GOC Meeting - Berkeley

Protein oligomerization terms in GO

  • Check on how the review of BP terms is going
  • Will start on MF terms, specifically 'protein dimerization activity' GO:0046983

GO-CAMs and Annotation Extensions

  • After USC hackathon in June, we formed a small working group to fully articulate the GO-CAM model specifications
  • This will allow for consistent GO-CAM curation using Noctua workbenches, import projects (e.g. Reactome and MOD imports)
  • Will also allow us to move forward with harmonizing AE relations used in GO-CAM and conventional annotation
    • On today's call, we will review the annotation extension relations currently used with MF terms and the proposed updates to their use in order to align conventional annotation and GO-CAM models
    • Google summary spreadsheet of MF extensions
      • MF annotation extensions to review:
        • part_of (GO:CC, CL, UBERON)
        • has_input (not highest priority, but groups can review existing has_input to see if NOT direct; refer to previous github ticket for now)
        • occurs_at (occurs_in OR has_input - discuss useful granularity of SO terms for GO annotation)
        • happens_during (GO:BP (that is not a biological phase))
        • activated_by and inhibited_by (TBD)
        • long tail.....
      • gorel relations to obsolete:
        • not_happens_during
        • in_presence_of

Minutes

  • Present: Chris, David, Dmitry, Edith, Giulia, Harold, Kimberly, Laurent-Philippe, Midori, Pascale, Patrick, Rob, Sabrina, Seth, Shur-Jen, Stacia, Suzi, Tanya