Annotation Conf. Call 2019-08-13: Difference between revisions
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**** happens_during (GO:BP (that is not a biological phase)) | **** happens_during (GO:BP (that is not a biological phase)) | ||
**** activated_by and inhibited_by (TBD) | **** activated_by and inhibited_by (TBD) | ||
**** long tail..... | |||
= Minutes = | = Minutes = |
Revision as of 10:33, 13 August 2019
Agenda
October GOC Meeting - Berkeley
Protein oligomerization terms in GO
- Check on how the review of BP terms is going
- Will start on MF terms, specifically 'protein dimerization activity' GO:0046983
GO-CAMs and Annotation Extensions
- After USC hackathon in June, we formed a small working group to fully articulate the GO-CAM model specifications
- This will allow for consistent GO-CAM curation using Noctua workbenches, import projects (e.g. Reactome and MOD imports)
- Will also allow us to move forward with harmonizing AE relations used in GO-CAM and conventional annotation
- On today's call, we will review the annotation extension relations currently used with MF terms and the proposed updates to their use in order to align conventional annotation and GO-CAM models
- Google summary spreadsheet of MF extensions
- MF annotation extensions to review:
- part_of (GO:CC, CL, UBERON)
- has_input (not highest priority, but groups can review existing has_input to see if NOT direct; refer to previous github ticket for now)
- occurs_at (occurs_in OR has_input - discuss useful granularity of SO terms for GO annotation)
- happens_during (GO:BP (that is not a biological phase))
- activated_by and inhibited_by (TBD)
- long tail.....
- MF annotation extensions to review:
Minutes
- Present: